fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052949 QELPTDLRLGLGISAT in 35/177 AT2G46990.1 1st_1st 0.449122807 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G46990.1     MGRGRSSSSSSIESSSKSNPF--GASSSTRNLSTDLRLGLSFGTSSGTQYF----NGGYG
gm052949_Glyma1 MGKPASSSSSSISSTTNRHLLLSTASSLTQELPTDLRLGLGI---SATQHFASSISRGQW
                **:  *******.*::: : :   *** *::*.*******.:   *.**:*    . *  

AT2G46990.1     YSVAAPAVEDAEYVAAVEEEEENEC-NSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIR
gm052949_Glyma1 QQSHHPFVNIYSQVPA----EVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVR
                 .   * *:  . *.*    * *:* *. .**:*** ***:*****::::: .** :*:*

AT2G46990.1     TLDFMFNASILWAEEEDMCN-EKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN
gm052949_Glyma1 TLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVD
                **:.**:::***. * :  : *:.***** *:*** :**************:****:*.:

AT2G46990.1     YHY-
gm052949_Glyma1 TFGC
                 .
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G R S S S S S S I E S S S K S N P F - - G A S S S T R N L S T D L R L G L S F G T S S G T Q Y F - - - - N G G Y G
gm052949_Glyma1    M G K P A S S S S S S I S S T T N R H L L L S T A S S L T Q E L P T D L R L G L G I - - - S A T Q H F A S S I S R G Q W
 
AT2G46990.1     Y S V A A P A V E D A E Y V A A V E E E E E N E C - N S V G S F Y V K V N M E G V P I G R K I D L M S L N G Y R D L I R
gm052949_Glyma1    Q Q S H H P F V N I Y S Q V P A - - - - E V N D C S N D H S S F F V K V Y M E G I P I G R K L N I L A H G G Y Y E L V R
 
AT2G46990.1     T L D F M F N A S I L W A E E E D M C N - E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R L K I S R A N
gm052949_Glyma1    T L E H M F D T T I L W G T E M N G V Q P E R C H V L T Y E D E E G D L V M V G D V P W E M F L S T V K R L K I T R V D
 
AT2G46990.1     Y H Y -
gm052949_Glyma1    T F G C
 
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