fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_not 0.470175438 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G46990.1     MGRG-RSSSSSSIESS---SKSNPFGASSSTRNLSTDLRLGLSFGTSSGTQYFNGGYGYS
pt016750_POPTR_ MGRGATSSSSSSFESSNYPSVSSKSSLSQLKKDLSTDLRLGLSISTSQQE---------N
                ****  ******:***   * *.  . *. .::**********:.**.           .

AT2G46990.1     VAAPAVEDAE-------YVAAVEEEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYR
pt016750_POPTR_ PSTPSDQQLSDWPPIKPFLRKALASEENECSS-ATFFVKVYMEGIPIGRKLNLLAHDGYH
                 ::*: :: .       ::  .  .*****.* .:*:*** ***:*****::*:: :**:

AT2G46990.1     DLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKIS
pt016750_POPTR_ DLIQTLDQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKIT
                ***:*** ***:****.* :   . :.***** ******::**********.:******:

AT2G46990.1     RANYHY
pt016750_POPTR_ RADSL-
                **:
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G - R S S S S S S I E S S - - - S K S N P F G A S S S T R N L S T D L R L G L S F G T S S G T Q Y F N G G Y G Y S
pt016750_POPTR_    M G R G A T S S S S S S F E S S N Y P S V S S K S S L S Q L K K D L S T D L R L G L S I S T S Q Q E - - - - - - - - - N
 
AT2G46990.1     V A A P A V E D A E - - - - - - - Y V A A V E E E E E N E C N S V G S F Y V K V N M E G V P I G R K I D L M S L N G Y R
pt016750_POPTR_    P S T P S D Q Q L S D W P P I K P F L R K A L A S E E N E C S S - A T F F V K V Y M E G I P I G R K L N L L A H D G Y H
 
AT2G46990.1     D L I R T L D F M F N A S I L W A E E E D M C N E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R L K I S
pt016750_POPTR_    D L I Q T L D Q M F N T S I L W P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R L K I T
 
AT2G46990.1     R A N Y H Y
pt016750_POPTR_    R A D S L -
 
0