fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt039254 RDLSTDLRLGLGISTS in 37/174 AT3G62100.1 not_not 0.445614035 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G46990.1     MGRG-RSSSSSSIESSSKSNPFGASS---STRNLSTDLRLGLSFGTSS-------GTQYF
pt039254_POPTR_ MGRGAASSSSSSFESSRYPSVSGESSFPHVKRDLSTDLRLGLGISTSRQDNPSTPSEQLL
                ****  ******:***  ..  * **    .*:*********.:.**        . * :

AT2G46990.1     NGGYGYSVAAPAVEDAEYVAAVEEEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYR
pt039254_POPTR_ DW--------PPIKPSPGKAVT--SEENECCS-STLFVKVYMEGIQIGRKLNLLAHDGYH
                :         *.:: :   *..  .***** * .:::*** ***: ****::*:: :**:

AT2G46990.1     DLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKIS
pt039254_POPTR_ DLIQTLDEMFNTSILWPEMDVEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPSVRRLKIT
                ***:*** ***:****.* :   . *.***** ******::*******:**.:******:

AT2G46990.1     RANYHY
pt039254_POPTR_ RADSL-
                **:
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G - R S S S S S S I E S S S K S N P F G A S S - - - S T R N L S T D L R L G L S F G T S S - - - - - - - G T Q Y F
pt039254_POPTR_    M G R G A A S S S S S S F E S S R Y P S V S G E S S F P H V K R D L S T D L R L G L G I S T S R Q D N P S T P S E Q L L
 
AT2G46990.1     N G G Y G Y S V A A P A V E D A E Y V A A V E E E E E N E C N S V G S F Y V K V N M E G V P I G R K I D L M S L N G Y R
pt039254_POPTR_    D W - - - - - - - - P P I K P S P G K A V T - - S E E N E C C S - S T L F V K V Y M E G I Q I G R K L N L L A H D G Y H
 
AT2G46990.1     D L I R T L D F M F N A S I L W A E E E D M C N E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R L K I S
pt039254_POPTR_    D L I Q T L D E M F N T S I L W P E M D V E H S G K C H V L T Y E D K E G D W L I V G D V P W E V F L P S V R R L K I T
 
AT2G46990.1     R A N Y H Y
pt039254_POPTR_    R A D S L -
 
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