fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_not 0.470175438 II
Pt039254 RDLSTDLRLGLGISTS in 37/174 AT3G62100.1 not_not 0.445614035 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G46990.1     MGRG-RSSSSSSIESSSKSNPFGASSST---RNLSTDLRLGLSFGTSSGTQYFNGGYGYS
pt016750_POPTR_ MGRGATSSSSSSFESSNYPSVSSKSSLSQLKKDLSTDLRLGLSISTSQQE---------N
pt039254_POPTR_ MGRGAASSSSSSFESSRYPSVSGESSFPHVKRDLSTDLRLGLGISTSRQD---------N
                ****  ******:***  ..  . ** .   ::*********.:.**            .

AT2G46990.1     VAAPAVED-------AEYVAAVEEEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYR
pt016750_POPTR_ PSTPSDQQLSDWPPIKPFLRKALASEENECSS-ATFFVKVYMEGIPIGRKLNLLAHDGYH
pt039254_POPTR_ PSTPS-EQLLDWPPIKPSPGKAVTSEENECCS-STLFVKVYMEGIQIGRKLNLLAHDGYH
                 ::*: ::             .  .***** * .:::*** ***: ****::*:: :**:

AT2G46990.1     DLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKIS
pt016750_POPTR_ DLIQTLDQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKIT
pt039254_POPTR_ DLIQTLDEMFNTSILWPEMDVEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPSVRRLKIT
                ***:*** ***:****.* :   . :.***** ******::*******:**.:******:

AT2G46990.1     RANYHY
pt016750_POPTR_ RADSL-
pt039254_POPTR_ RADSL-
                **:
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G - R S S S S S S I E S S S K S N P F G A S S S T - - - R N L S T D L R L G L S F G T S S G T Q Y F N G G Y G Y S
pt016750_POPTR_    M G R G A T S S S S S S F E S S N Y P S V S S K S S L S Q L K K D L S T D L R L G L S I S T S Q Q E - - - - - - - - - N
pt039254_POPTR_    M G R G A A S S S S S S F E S S R Y P S V S G E S S F P H V K R D L S T D L R L G L G I S T S R Q D - - - - - - - - - N
 
AT2G46990.1     V A A P A V E D - - - - - - - A E Y V A A V E E E E E N E C N S V G S F Y V K V N M E G V P I G R K I D L M S L N G Y R
pt016750_POPTR_    P S T P S D Q Q L S D W P P I K P F L R K A L A S E E N E C S S - A T F F V K V Y M E G I P I G R K L N L L A H D G Y H
pt039254_POPTR_    P S T P S - E Q L L D W P P I K P S P G K A V T S E E N E C C S - S T L F V K V Y M E G I Q I G R K L N L L A H D G Y H
 
AT2G46990.1     D L I R T L D F M F N A S I L W A E E E D M C N E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R L K I S
pt016750_POPTR_    D L I Q T L D Q M F N T S I L W P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R L K I T
pt039254_POPTR_    D L I Q T L D E M F N T S I L W P E M D V E H S G K C H V L T Y E D K E G D W L I V G D V P W E V F L P S V R R L K I T
 
AT2G46990.1     R A N Y H Y
pt016750_POPTR_    R A D S L -
pt039254_POPTR_    R A D S L -
 
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