fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os009627 SLISTDLRLGLTLSSV in 57/205 AT2G46990.1 1st_1st 0.378947368 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G46990.1     ---MGRGRSS--SSSSIES------------------SSKSNPFGASSSTRNL-STDLRL
Os009627_Os02t0 MECMASTEESLPASSSMDSCSGELPTTTTTAPAQSTASSGCRPPATAAKRRSLISTDLRL
                   *.  ..*  :***::*                  ** ..* .:::. *.* ******

AT2G46990.1     GLSFGTSSGTQYFNGGYGYSVAAPAVEDAEY-VAAVEEEEENECNSVG---SFYVKVNME
Os009627_Os02t0 GL---TLSSVVHIDGN------NPSTPRSSLTTATVTADRGGGGGGHGRRRSLFVKVYME
                **   * *.. :::*.       *:.  :.  .*:*  :. .  .. *   *::*** **

AT2G46990.1     GVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMC-----------NEKSHVLTY
Os009627_Os02t0 GVPIGRKLDLLPLDGYKGLVARLASMFRASITYHH----CHRQFAVVGMKTNKVHHVLTY
                *******:**:.*:**:.*:  *  **.*** : .    *           *:  *****

AT2G46990.1     ADKEGDWMMVGDVPWEMFLSTVRRLKISRANYHY----
Os009627_Os02t0 EDQEGDWMMAGDVPWELFLTSVKRLRIARADDKYCYSC
                 *:******.******:**::*:**:*:**: :*
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     - - - M G R G R S S - - S S S S I E S - - - - - - - - - - - - - - - - - - S S K S N P F G A S S S T R N L - S T D L R L
Os009627_Os02t0    M E C M A S T E E S L P A S S S M D S C S G E L P T T T T T A P A Q S T A S S G C R P P A T A A K R R S L I S T D L R L
 
AT2G46990.1     G L S F G T S S G T Q Y F N G G Y G Y S V A A P A V E D A E Y - V A A V E E E E E N E C N S V G - - - S F Y V K V N M E
Os009627_Os02t0    G L - - - T L S S V V H I D G N - - - - - - N P S T P R S S L T T A T V T A D R G G G G G G H G R R R S L F V K V Y M E
 
AT2G46990.1     G V P I G R K I D L M S L N G Y R D L I R T L D F M F N A S I L W A E E E D M C - - - - - - - - - - - N E K S H V L T Y
Os009627_Os02t0    G V P I G R K L D L L P L D G Y K G L V A R L A S M F R A S I T Y H H - - - - C H R Q F A V V G M K T N K V H H V L T Y
 
AT2G46990.1     A D K E G D W M M V G D V P W E M F L S T V R R L K I S R A N Y H Y - - - -
Os009627_Os02t0    E D Q E G D W M M A G D V P W E L F L T S V K R L R I A R A D D K Y C Y S C
 
1