fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm007900 QQLPTDLRLGLGISAT in 35/180 AT2G46990.1 not_1st 0.435087719 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G46990.1     MGRGRSSSSSSIESSSKSNPF--GASSSTRNLSTDLRLGLSFGTSSGTQY----FNGGYG
gm007900_Glyma0 MGKPASSSSSSISSTTNRRLLISTASSLTQQLPTDLRLGLGI---SATQHVASSISRGQW
                **:  *******.*::: . :   *** *::*.*******.:   *.**:    :. *  

AT2G46990.1     YSVAAPAVEDAEYVAAVEEEEENEC-NSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIR
gm007900_Glyma0 QQPHHPFVNN-NYSQAAASAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVR
                 .   * *:: :*  *. . * *:* *. .**:*** ***:*****::::: .** :*:*

AT2G46990.1     TLDFMFNASILWAEEEDMCN-EKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN
gm007900_Glyma0 TLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVD
                **:.**:::***. * :  : *:.***** *:*** :**************:****:*.:

AT2G46990.1     YHY-
gm007900_Glyma0 TFGC
                 .
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G R S S S S S S I E S S S K S N P F - - G A S S S T R N L S T D L R L G L S F G T S S G T Q Y - - - - F N G G Y G
gm007900_Glyma0    M G K P A S S S S S S I S S T T N R R L L I S T A S S L T Q Q L P T D L R L G L G I - - - S A T Q H V A S S I S R G Q W
 
AT2G46990.1     Y S V A A P A V E D A E Y V A A V E E E E E N E C - N S V G S F Y V K V N M E G V P I G R K I D L M S L N G Y R D L I R
gm007900_Glyma0    Q Q P H H P F V N N - N Y S Q A A A S A E V N D C S N D H S S F F V K V Y M E G I P I G R K L N I L A H G G Y Y E L V R
 
AT2G46990.1     T L D F M F N A S I L W A E E E D M C N - E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R L K I S R A N
gm007900_Glyma0    T L E H M F D T T I L W G T E M N G V Q P E R C H V L T Y E D E E G D L V M V G D V P W E M F L S T V K R L K I T R V D
 
AT2G46990.1     Y H Y -
gm007900_Glyma0    T F G C
 
0