fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G01140.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050405 not found in 379aa AT5G15310.1 not_not 0.451612903 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G01140.1     MPIHVRDREKGRLQNLNRDIFCCVSPSIYQSDAKRAAFVIILIMIISPCCDKAGLKKGPW
gm050405_Glyma1 ---------MGR----------------------------------SPCCDKVGLKKGPW
                          **                                  ******.*******

AT3G01140.1     TPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQT
gm050405_Glyma1 TPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQT
                *********************:** ****************************::*****

AT3G01140.1     IIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVTHKHKNETLSSST
gm050405_Glyma1 IIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALVSTE
                *************************************** ********** **::* *: 

AT3G01140.1     GQSKNAATLSHMAQWESARLEAEARLARESKLLHLQHYQNNNNL------------NKSA
gm050405_Glyma1 GPSKSAANLSHMAQWESARLEAEARLVRESKLRSSSH--SSSSLHHTLIGTSAVSSSSSS
                * **.**.******************.*****   .*  ....*            ..*:

AT3G01140.1     APQ--------QHCFTQ----KTSTNWTKPNQGNGDQQLESPTSTVTFSENLLMPLGIPT
gm050405_Glyma1 APMIPPSSLSLDHAWNNGSSISTTVNATRVS------DLESPTSTL--SENNAPPINI--
                **         :*.:.:    .*:.* *: .      :*******:  ***   *:.*  

AT3G01140.1     DSSRNRNNNNNESSAMIELAVSSSTSSDVSLVKE--------------------------
gm050405_Glyma1 -------------TSVIEFVGSSERGT----VKEEGEQEWNKLGYHESFTHLGEYKDGKE
                             :::**:. **. .:    ***                          

AT3G01140.1     ------------HEHDWIRQINCGSGGIGEGFTSLLIGDSVG-RGL-PTGKNEA------
gm050405_Glyma1 NSMPFTTSGAHAHAHAHVAEEGC--------FTNLLLNANSGARSLSPQDGGESNNCHDN
                            * *  : : .*        **.**:. . * *.* * . .*:      

AT3G01140.1     --TAGVGNESEYNYYEDNKNYWNSILNLVD-SSPSDSATMF
gm050405_Glyma1 ARNSGSGS-SNADLYEENKNYWNNILNLMNYSSPSDSP-MF
                  .:* *. *: : **:******.****:: ******. **
BoxShade v3.31 C (beta, 970507) Output
AT3G01140.1     M P I H V R D R E K G R L Q N L N R D I F C C V S P S I Y Q S D A K R A A F V I I L I M I I S P C C D K A G L K K G P W
gm050405_Glyma1    - - - - - - - - - M G R - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S P C C D K V G L K K G P W
 
AT3G01140.1     T P E E D Q K L L A Y I E E H G H G S W R S L P E K A G L Q R C G K S C R L R W T N Y L R P D I K R G K F T V Q E E Q T
gm050405_Glyma1    T P E E D Q K L L A Y I E E H G H G S W R A L P A K A G L Q R C G K S C R L R W T N Y L R P D I K R G K F S M Q E E Q T
 
AT3G01140.1     I I Q L H A L L G N R W S A I A T H L P K R T D N E I K N Y W N T H L K K R L I K M G I D P V T H K H K N E T L S S S T
gm050405_Glyma1    I I Q L H A L L G N R W S A I A T H L P K R T D N E I K N Y W N T H L K K R L D K M G I D P V T H K P K N D A L V S T E
 
AT3G01140.1     G Q S K N A A T L S H M A Q W E S A R L E A E A R L A R E S K L L H L Q H Y Q N N N N L - - - - - - - - - - - - N K S A
gm050405_Glyma1    G P S K S A A N L S H M A Q W E S A R L E A E A R L V R E S K L R S S S H - - S S S S L H H T L I G T S A V S S S S S S
 
AT3G01140.1     A P Q - - - - - - - - Q H C F T Q - - - - K T S T N W T K P N Q G N G D Q Q L E S P T S T V T F S E N L L M P L G I P T
gm050405_Glyma1    A P M I P P S S L S L D H A W N N G S S I S T T V N A T R V S - - - - - - D L E S P T S T L - - S E N N A P P I N I - -
 
AT3G01140.1     D S S R N R N N N N N E S S A M I E L A V S S S T S S D V S L V K E - - - - - - - - - - - - - - - - - - - - - - - - - -
gm050405_Glyma1    - - - - - - - - - - - - - T S V I E F V G S S E R G T - - - - V K E E G E Q E W N K L G Y H E S F T H L G E Y K D G K E
 
AT3G01140.1     - - - - - - - - - - - - H E H D W I R Q I N C G S G G I G E G F T S L L I G D S V G - R G L - P T G K N E A - - - - - -
gm050405_Glyma1    N S M P F T T S G A H A H A H A H V A E E G C - - - - - - - - F T N L L L N A N S G A R S L S P Q D G G E S N N C H D N
 
AT3G01140.1     - - T A G V G N E S E Y N Y Y E D N K N Y W N S I L N L V D - S S P S D S A T M F
gm050405_Glyma1    A R N S G S G S - S N A D L Y E E N K N Y W N N I L N L M N Y S S P S D S P - M F
 
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