fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G02940.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt013140 not found in 300aa AT3G02940.1 1st_1st 0.467213114 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G02940.1     MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY
pt013140_POPTR_ MAESPFQDESALKKGPWTPEEDQKLIDYVQKHGHGSWRALPMLAGLNRCGKSCRLRWTNY
                *..**  ***.***************::::***********  *****************

AT3G02940.1     LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG
pt013140_POPTR_ LRPDIKRGNFSEEEQQMIIDFHQVLGNKWSAIAQHLPGRTDNEIKNFWNTHLKKKLLQMG
                **********: **:* **::*.:******:** ************:****::***:***

AT3G02940.1     IDPVTHRPRTDHLNVLAALPQLL-AAANFNNLLNLNQN----IQLDATSVAKAQLLHSMI
pt013140_POPTR_ IDPVTHRPRTD-LNIIANLPQLLAAAANFSNLMNIPWDNAIKAQVDAT---KLQLLHNIL
                *********** **::* ***** *****.**:*:  :     *:***   * ****.::

AT3G02940.1     QVLSNNNTSSSFDIHHTTNNLFGQSSFLENLPNIE---------NPYDQTQGLSHIDDQP
pt013140_POPTR_ QVLGNKGLLKCGEDGLSSQGINAQAQ--SNFPNIDAPQQPFSDHNPIKDSKSRTHNSDQL
                ***.*:.  .. :   :::.: .*:.  .*:***:         ** .:::. :* .** 

AT3G02940.1     LDSFSSPIRVVAYQHDQNFIPPLISTSPDESKETQMMVKNKEIMKYNDHTSNPSSTSTFT
pt013140_POPTR_ VSSYAFPT--------SNTLPQLVSASPECS--------SANTINPNDIISNPSNATSTT
                :.*:: *         .* :* *:*:**: *        . : :: **  ****.::: *

AT3G02940.1     QDHQPWCDIIDDEASDSYWKEIIEQTCSEPWPFRE
pt013140_POPTR_ --FEAWRNLMDDGANDNYWIDIIE-----------
                  .:.* :::** *.*.** :***
BoxShade v3.31 C (beta, 970507) Output
AT3G02940.1     M G R S P C C D E S G L K K G P W T P E E D Q K L I N H I R K H G H G S W R A L P K Q A G L N R C G K S C R L R W T N Y
pt013140_POPTR_    M A E S P F Q D E S A L K K G P W T P E E D Q K L I D Y V Q K H G H G S W R A L P M L A G L N R C G K S C R L R W T N Y
 
AT3G02940.1     L R P D I K R G N F T A E E E Q T I I N L H S L L G N K W S S I A G H L P G R T D N E I K N Y W N T H I R K K L I Q M G
pt013140_POPTR_    L R P D I K R G N F S E E E Q Q M I I D F H Q V L G N K W S A I A Q H L P G R T D N E I K N F W N T H L K K K L L Q M G
 
AT3G02940.1     I D P V T H R P R T D H L N V L A A L P Q L L - A A A N F N N L L N L N Q N - - - - I Q L D A T S V A K A Q L L H S M I
pt013140_POPTR_    I D P V T H R P R T D - L N I I A N L P Q L L A A A A N F S N L M N I P W D N A I K A Q V D A T - - - K L Q L L H N I L
 
AT3G02940.1     Q V L S N N N T S S S F D I H H T T N N L F G Q S S F L E N L P N I E - - - - - - - - - N P Y D Q T Q G L S H I D D Q P
pt013140_POPTR_    Q V L G N K G L L K C G E D G L S S Q G I N A Q A Q - - S N F P N I D A P Q Q P F S D H N P I K D S K S R T H N S D Q L
 
AT3G02940.1     L D S F S S P I R V V A Y Q H D Q N F I P P L I S T S P D E S K E T Q M M V K N K E I M K Y N D H T S N P S S T S T F T
pt013140_POPTR_    V S S Y A F P T - - - - - - - - S N T L P Q L V S A S P E C S - - - - - - - - S A N T I N P N D I I S N P S N A T S T T
 
AT3G02940.1     Q D H Q P W C D I I D D E A S D S Y W K E I I E Q T C S E P W P F R E
pt013140_POPTR_    - - F E A W R N L M D D G A N D N Y W I D I I E - - - - - - - - - - -
 
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