fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G04730.1 NFEATELRLGLPGGNH at 7/236 in AT3G04730.1
FSETVDLKLNLSSTAM at 36/236 in AT3G04730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt002101 NYEETELRLGLPGGAS in 22/250 AT3G04730.1 not_1st 0.682464454 II
FSETVDLKLNLSTKET in 53/250
Pt028468 SFKETELTLGLPGESR in 23/220 AT3G04730.1 not_1st 0.452606635 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G04730.1     ---------------MINFEATELRLGLPGGNHGGE--MAGKNNGKRGFSETVDLKLNLS
pt028468_POPTR_ MSPENGSNLLESDAANVSFKETELTLGLPGESRGLA--LIEKTSGKRGFLETVDLNLGRS
pt002101_POPTR_ MTSIMGAETADT-YSMINYEETELRLGLPGGASNGNDGEAAKGNGKRGFSETVDLKLNLS
                                :.:: *** *****   .       * .***** *****:*. *

AT3G04730.1     S--TAMDSVSKVDLEN--MKEKVV--------KPP-AKAQVVGWPPVRSFRKNVMSGQKP
pt028468_POPTR_ S---NVDS----DHNKYSGESETDVP---NTAKPPAAKAQVVGWPPVRAYRKNAMKSCK-
pt002101_POPTR_ TKETGKDG---SDQEKVVMKEKTVAPRPNDPAKPP-SKAQVVGWPPIRSFRKNVMAVQK-
                :     *.    * ::   :.:.         *** :*********:*::***.*   * 

AT3G04730.1     TTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALS
pt028468_POPTR_ -----------------------------YVKVAVDGAPYLRKVDLEMYNSYQQLLNALQ
pt002101_POPTR_ ---NSNDEGEKAS-SSGTTGTA------AFVKVSMDGAPYLRKVDLKLYKSYRELSDALG
                                             :***::********:**::*::*::* :** 

AT3G04730.1     KMFS--SFTIGNYGPQGMKDFMNESKLI--DLLNGSDYVPTYEDKDGDWMLVGDVPWEMF
pt028468_POPTR_ DMFSCFSFTI--------RNYLNERTIMEQEVNNGVEYVPTYEDKDGDWMMLGDVPWKMF
pt002101_POPTR_ KMFS--SFTIGNCGSQGTKDFMNESKLI--DLLNSSEYVPTYEDKDGDWMLVGDVPWGMF
                .***  ****        ::::** .::  :: *. :*************::***** **

AT3G04730.1     VDSCKRIRIMKGSEAIGLAPRALEKCKNRS
pt028468_POPTR_ VESCKRLRLMKSSEATGFAPRTPSKCSSSS
pt002101_POPTR_ VDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
                *:****:*:**.*** *:***: .**.. *
BoxShade v3.31 C (beta, 970507) Output
AT3G04730.1     - - - - - - - - - - - - - - - M I N F E A T E L R L G L P G G N H G G E - - M A G K N N G K R G F S E T V D L K L N L S
pt028468_POPTR_    M S P E N G S N L L E S D A A N V S F K E T E L T L G L P G E S R G L A - - L I E K T S G K R G F L E T V D L N L G R S
pt002101_POPTR_    M T S I M G A E T A D T - Y S M I N Y E E T E L R L G L P G G A S N G N D G E A A K G N G K R G F S E T V D L K L N L S
 
AT3G04730.1     S - - T A M D S V S K V D L E N - - M K E K V V - - - - - - - - K P P - A K A Q V V G W P P V R S F R K N V M S G Q K P
pt028468_POPTR_    S - - - N V D S - - - - D H N K Y S G E S E T D V P - - - N T A K P P A A K A Q V V G W P P V R A Y R K N A M K S C K -
pt002101_POPTR_    T K E T G K D G - - - S D Q E K V V M K E K T V A P R P N D P A K P P - S K A Q V V G W P P I R S F R K N V M A V Q K -
 
AT3G04730.1     T T G D A T E G N D K T S G S S G A T S S A S A C A T V A Y V K V S M D G A P Y L R K I D L K L Y K T Y Q D L S N A L S
pt028468_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Y V K V A V D G A P Y L R K V D L E M Y N S Y Q Q L L N A L Q
pt002101_POPTR_    - - - N S N D E G E K A S - S S G T T G T A - - - - - - A F V K V S M D G A P Y L R K V D L K L Y K S Y R E L S D A L G
 
AT3G04730.1     K M F S - - S F T I G N Y G P Q G M K D F M N E S K L I - - D L L N G S D Y V P T Y E D K D G D W M L V G D V P W E M F
pt028468_POPTR_    D M F S C F S F T I - - - - - - - - R N Y L N E R T I M E Q E V N N G V E Y V P T Y E D K D G D W M M L G D V P W K M F
pt002101_POPTR_    K M F S - - S F T I G N C G S Q G T K D F M N E S K L I - - D L L N S S E Y V P T Y E D K D G D W M L V G D V P W G M F
 
AT3G04730.1     V D S C K R I R I M K G S E A I G L A P R A L E K C K N R S
pt028468_POPTR_    V E S C K R L R L M K S S E A T G F A P R T P S K C S S S S
pt002101_POPTR_    V D S C K R L R I M K G S E A I G L A P R A V E K C K N R S
 
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