fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G04730.1 NFEATELRLGLPGGNH at 7/236 in AT3G04730.1
FSETVDLKLNLSSTAM at 36/236 in AT3G04730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt015737 NFEETELRLGLPGGIG in 21/246 AT3G04730.1 1st_1st 0.699052132 Ia
FSETVDLKLNLSTKES in 52/246
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G04730.1     -------------MINFEATELRLGLPGG---NHGGEMAGKNNGKRGFSETVDLKLNLSS
pt015737_POPTR_ MTSIMGAEPEKYSMINFEETELRLGLPGGIGNGNDGEVA-KSNGKRGFSETVDLKLNLST
                             ***** **********   .:.**:* *.*****************:

AT3G04730.1     TAMDSVSKVDLEN-MKEKVV---------KPPAKAQVVGWPPVRSFRKNVMSGQKPTTGD
pt015737_POPTR_ K--ESGKGGDEEKVMKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVMAVQK-----
                .  :* .  * *: ****.*         *************:********: **     

AT3G04730.1     ATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFS
pt015737_POPTR_ NSNDNGEKSGSSG--------TGVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS
                 ::.*.:.*****        : **:*************:******:**:**:**.****

AT3G04730.1     SFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIR
pt015737_POPTR_ SFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLR
                ****** *.*************************************************:*

AT3G04730.1     IMKGSEAIGLAPRALEKCKNRS
pt015737_POPTR_ IMKGSEAIGLAPRAVEKCKNRI
                **************:******
BoxShade v3.31 C (beta, 970507) Output
AT3G04730.1     - - - - - - - - - - - - - M I N F E A T E L R L G L P G G - - - N H G G E M A G K N N G K R G F S E T V D L K L N L S S
pt015737_POPTR_    M T S I M G A E P E K Y S M I N F E E T E L R L G L P G G I G N G N D G E V A - K S N G K R G F S E T V D L K L N L S T
 
AT3G04730.1     T A M D S V S K V D L E N - M K E K V V - - - - - - - - - K P P A K A Q V V G W P P V R S F R K N V M S G Q K P T T G D
pt015737_POPTR_    K - - E S G K G G D E E K V M K E K T V A P P A S T D P A K P P A K A Q V V G W P P I R S F R K N V M A V Q K - - - - -
 
AT3G04730.1     A T E G N D K T S G S S G A T S S A S A C A T V A Y V K V S M D G A P Y L R K I D L K L Y K T Y Q D L S N A L S K M F S
pt015737_POPTR_    N S N D N G E K S G S S G - - - - - - - - T G V A F V K V S M D G A P Y L R K V D L K L Y K S Y Q E L S D A L G K M F S
 
AT3G04730.1     S F T I G N Y G P Q G M K D F M N E S K L I D L L N G S D Y V P T Y E D K D G D W M L V G D V P W E M F V D S C K R I R
pt015737_POPTR_    S F T I G N C G S Q G M K D F M N E S K L I D L L N G S D Y V P T Y E D K D G D W M L V G D V P W E M F V D S C K R L R
 
AT3G04730.1     I M K G S E A I G L A P R A L E K C K N R S
pt015737_POPTR_    I M K G S E A I G L A P R A V E K C K N R I
 
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