fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G04730.1 NFEATELRLGLPGGNH at 7/236 in AT3G04730.1
FSETVDLKLNLSSTAM at 36/236 in AT3G04730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb033829 AAAATELRLGLPGTEE in 21/348 AT4G29080.1 not_not 0.462085308 III
YKNYKDLSLALEKMFS in 156/348
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G04730.1     --------MINFE-----ATELRLGLPGGNH--GGEMAG----------KNNGKRGFSET
Sb033829_Sorbi1 MAPPQEQDYIGLSPAAAAATELRLGLPGTEEADGGEAAAGTPLTLELLPKGGAKRGFTDA
                         *.:.     ********** :.  *** *.          *...****:::

AT3G04730.1     VDLKLNLSSTAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDA
Sb033829_Sorbi1 I---VRREAAARGKAPAEDEEVDKKKTQAPAAKAQVVGWPPIRSYRKNTMAMNQPTLKTK
                :   :. .::* ....  * *  *:*.  *.**********:**:***.*: ::**    

AT3G04730.1     TEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSS
Sb033829_Sorbi1 DDGEAKQ----------ALVQDCLYVKVSMDGAPYLRKVDLKMYKNYKDLSLALEKMFSC
                 :*: *           :      **************:***:**.*:*** **.****.

AT3G04730.1     FTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRI
Sb033829_Sorbi1 FTVGHSESNGKSGREGLSDCRLMDHKNGTELVLTYKDKDGDWMLVGDVPWRMFTGSCRRL
                **:*:  .:*   :: :.:.:*:*  **:: * **:**************.**..**:*:

AT3G04730.1     RIMKGSEAIGLAPRALEKCKNRS
Sb033829_Sorbi1 RIMKGSDAVGLAPRVSDKSKNG-
                ******:*:*****. :*.**
BoxShade v3.31 C (beta, 970507) Output
AT3G04730.1     - - - - - - - - M I N F E - - - - - A T E L R L G L P G G N H - - G G E M A G - - - - - - - - - - K N N G K R G F S E T
Sb033829_Sorbi1    M A P P Q E Q D Y I G L S P A A A A A T E L R L G L P G T E E A D G G E A A A G T P L T L E L L P K G G A K R G F T D A
 
AT3G04730.1     V D L K L N L S S T A M D S V S K V D L E N M K E K V V K P P A K A Q V V G W P P V R S F R K N V M S G Q K P T T G D A
Sb033829_Sorbi1    I - - - V R R E A A A R G K A P A E D E E V D K K K T Q A P A A K A Q V V G W P P I R S Y R K N T M A M N Q P T L K T K
 
AT3G04730.1     T E G N D K T S G S S G A T S S A S A C A T V A Y V K V S M D G A P Y L R K I D L K L Y K T Y Q D L S N A L S K M F S S
Sb033829_Sorbi1    D D G E A K Q - - - - - - - - - - A L V Q D C L Y V K V S M D G A P Y L R K V D L K M Y K N Y K D L S L A L E K M F S C
 
AT3G04730.1     F T I G N Y G P Q G M - - K D F M N E S K L I D L L N G S D Y V P T Y E D K D G D W M L V G D V P W E M F V D S C K R I
Sb033829_Sorbi1    F T V G H S E S N G K S G R E G L S D C R L M D H K N G T E L V L T Y K D K D G D W M L V G D V P W R M F T G S C R R L
 
AT3G04730.1     R I M K G S E A I G L A P R A L E K C K N R S
Sb033829_Sorbi1    R I M K G S D A V G L A P R V S D K S K N G -
 
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