fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G11260.1 EKVIETLQLFPVNSFE at 119/182 in AT3G11260.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm005098 DRVIETLQLFPLNSFG in 125/177 AT3G11260.1 1st_1st 0.509859154 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G11260.1     MSFSVKG---RSLRGNNNGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTE
gm005098_Glyma0 MDEGLSGFCIRSSSGSVRGKSGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQ
                *. .:.*   **  *. .* :**********.**:*:**:***:*****:*********:

AT3G11260.1     LSFYGKIESKNVFYWFQNHKARERQKRRKISIDFDH-----HHHQPSTR---DVFEISEE
gm005098_Glyma0 LSFYGKIESKNVFYWFQNHKARERQKNRKLSFD-DHKDLICRQNAPSTQSLAEMYQVSKP
                **************************.**:*:* **     ::: ***:   :::::*: 

AT3G11260.1     DCQEEEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEM
gm005098_Glyma0 D-----RVIETLQLFPLNSFGESEP--EKLRLRASE-----CRDNNNTMFS--YTMGEQM
                *     :*********:*** :*:.  :*:* *..:      *:...* **   : * :*

AT3G11260.1     EHPPPLDLRLSFL
gm005098_Glyma0 EH-PPLDLRLSFL
                ** **********
BoxShade v3.31 C (beta, 970507) Output
AT3G11260.1     M S F S V K G - - - R S L R G N N N G G T G T K C G R W N P T V E Q L K I L T D L F R A G L R T P T T D Q I Q K I S T E
gm005098_Glyma0    M D E G L S G F C I R S S S G S V R G K S G T K C G R W N P T T E Q V K L L T E L F R S G L R T P S T D Q I Q K I S T Q
 
AT3G11260.1     L S F Y G K I E S K N V F Y W F Q N H K A R E R Q K R R K I S I D F D H - - - - - H H H Q P S T R - - - D V F E I S E E
gm005098_Glyma0    L S F Y G K I E S K N V F Y W F Q N H K A R E R Q K N R K L S F D - D H K D L I C R Q N A P S T Q S L A E M Y Q V S K P
 
AT3G11260.1     D C Q E E E K V I E T L Q L F P V N S F E D S N S K V D K M R A R G N N Q Y R E Y I R E T T T T S F S P Y S S C G A E M
gm005098_Glyma0    D - - - - - R V I E T L Q L F P L N S F G E S E P - - E K L R L R A S E - - - - - C R D N N N T M F S - - Y T M G E Q M
 
AT3G11260.1     E H P P P L D L R L S F L
gm005098_Glyma0    E H - P P L D L R L S F L
 
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