fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G11280.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt041952 not found in 292aa AT5G05790.1 1st_not 0.478584729 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G11280.1     METLHPFSHLPISDHRFVVQEMVSLHSSSSGSWTKEENKMFERALAIYAEDSPDRWFKVA
pt041952_POPTR_ METL--YSSWSMSNPICVAQ---------TTEWTKEENKMFERALAIFDEHEPDRWLKVA
                ****  :*  .:*:   *.*         : .***************: *..****:***

AT3G11280.1     SMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPIPGYPAAS--SPLGFDT--DMCRKRPSGA
pt041952_POPTR_ AMIPGKTVNDVIKQYKKLEEDVCDIEAGRVPVPGYLSSSFTSELVDNSTFDAYRKRPLNI
                :******* **:***.****** ********:*** ::*  * *  ::  *  **** . 

AT3G11280.1     RGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQR-
pt041952_POPTR_ KSADQQRKKGVPWTEEEHRRFLMGLLKHGKGDWRNISRNFVGSKTPTQVASHAQKYFIRQ
                :.:**:****************:****:************* **************: * 

AT3G11280.1     QLSGAKDKRRPSIHDITTGNLLNANL-----NRSFSDHRDI-LPDLG-------FIDKDD
pt041952_POPTR_ QLSGVKDKRRPSIHDITTLNLAGSTSPSDGDKASSLDQSDVLLPQQKPAGMQKLLIDWDE
                ****.************* ** .:.      : *  *: *: **:         :** *:

AT3G11280.1     TEEGVIFMGQNLSSENLFSPSPTSFEA-AINFAGENVFSAGA------------------
pt041952_POPTR_ SKDGSV-MTFGSTHGDLFESSPYEISSNGLTFQGQNLY-AGARHGARIKPRNLVFQLSPP
                :::* : *  . :  :**..** .:.: .:.* *:*:: ***                  

AT3G11280.1     -----
pt041952_POPTR_ RFQIH
BoxShade v3.31 C (beta, 970507) Output
AT3G11280.1     M E T L H P F S H L P I S D H R F V V Q E M V S L H S S S S G S W T K E E N K M F E R A L A I Y A E D S P D R W F K V A
pt041952_POPTR_    M E T L - - Y S S W S M S N P I C V A Q - - - - - - - - - T T E W T K E E N K M F E R A L A I F D E H E P D R W L K V A
 
AT3G11280.1     S M I P G K T V F D V M K Q Y S K L E E D V F D I E A G R V P I P G Y P A A S - - S P L G F D T - - D M C R K R P S G A
pt041952_POPTR_    A M I P G K T V N D V I K Q Y K K L E E D V C D I E A G R V P V P G Y L S S S F T S E L V D N S T F D A Y R K R P L N I
 
AT3G11280.1     R G S D Q D R K K G V P W T E E E H R R F L L G L L K Y G K G D W R N I S R N F V V S K T P T Q V A S H A Q K Y Y Q R -
pt041952_POPTR_    K S A D Q Q R K K G V P W T E E E H R R F L M G L L K H G K G D W R N I S R N F V G S K T P T Q V A S H A Q K Y F I R Q
 
AT3G11280.1     Q L S G A K D K R R P S I H D I T T G N L L N A N L - - - - - N R S F S D H R D I - L P D L G - - - - - - - F I D K D D
pt041952_POPTR_    Q L S G V K D K R R P S I H D I T T L N L A G S T S P S D G D K A S S L D Q S D V L L P Q Q K P A G M Q K L L I D W D E
 
AT3G11280.1     T E E G V I F M G Q N L S S E N L F S P S P T S F E A - A I N F A G E N V F S A G A - - - - - - - - - - - - - - - - - -
pt041952_POPTR_    S K D G S V - M T F G S T H G D L F E S S P Y E I S S N G L T F Q G Q N L Y - A G A R H G A R I K P R N L V F Q L S P P
 
AT3G11280.1     - - - - -
pt041952_POPTR_    R F Q I H
 
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