fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G12130.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052123 not found in 225aa AT3G12130.1 1st_1st 0.444711538 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G12130.1     -MDTRKRGRPEAGSFNS-----NGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFG
gm052123_Glyma1 MMNLTPAAPPASRNVAALPPVPNG-------------SAPPAVKTRICNKFNTAEGCKFG
                 *:    . * : .. :     **             *:  . *:: *.** ::.** **

AT3G12130.1     ENCHFLH--YVPGGYNAVS--QMTNMGPPIPQVSRNMQGSGNGGRFSGRGESGPGHVSNF
gm052123_Glyma1 DKCHFAHGEWELGKHIAPSFDDHRTMGPT------------GVGRLAGRMEPPPGPAASF
                ::*** *  :  * : * *  :  .***.            . **::** *. ** .:.*

AT3G12130.1     GDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQI
gm052123_Glyma1 GANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQI
                * .***::**:*************.*********.****::** ****:** ***::***

AT3G12130.1     SEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFG
gm052123_Glyma1 KEASNMVKDLLLTLQMSA--PPKTTPGVPGAPASH-----GSNFKTKLCENFTKGSCTFG
                .*** *****:  *: :*  **    *  *. .*.     *******:**.*:**.****

AT3G12130.1     DRCHFAHGEAELRKSGIV
gm052123_Glyma1 DRCHFAHGAAELRKSGV-
                ******** *******:
BoxShade v3.31 C (beta, 970507) Output
AT3G12130.1     - M D T R K R G R P E A G S F N S - - - - - N G G G Y K K S K Q E M E S Y S T G L G S K S K P C T K F F S T S G C P F G
gm052123_Glyma1    M M N L T P A A P P A S R N V A A L P P V P N G - - - - - - - - - - - - - S A P P A V K T R I C N K F N T A E G C K F G
 
AT3G12130.1     E N C H F L H - - Y V P G G Y N A V S - - Q M T N M G P P I P Q V S R N M Q G S G N G G R F S G R G E S G P G H V S N F
gm052123_Glyma1    D K C H F A H G E W E L G K H I A P S F D D H R T M G P T - - - - - - - - - - - - G V G R L A G R M E P P P G P A A S F
 
AT3G12130.1     G D S A T A R F S V D A S L A G A I I G K G G V S S K Q I C R Q T G V K L S I Q D H E R D P N L K N I V L E G T L E Q I
gm052123_Glyma1    G A N A T A K I S V E A S L A G A I I G K G G V N S K Q I C R Q T G A K L S I R E H E S D P N L R N I E L E G S F E Q I
 
AT3G12130.1     S E A S A M V K D L I G R L N S A A K K P P G G G L G G G G G M G S E G K P H P G S N F K T K I C E R F S K G N C T F G
gm052123_Glyma1    K E A S N M V K D L L L T L Q M S A - - P P K T T P G V P G A P A S H - - - - - G S N F K T K L C E N F T K G S C T F G
 
AT3G12130.1     D R C H F A H G E A E L R K S G I V
gm052123_Glyma1    D R C H F A H G A A E L R K S G V -
 
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