fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G12730.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035028 not found in 356aa AT1G79430.2 1st_not 0.401425178 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G12730.1     MMQSREEIRDDS---------SSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATP
pt035028_POPTR_ MFHTKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATP
                *:::::    :*         .****************.***********:****:****

AT3G12730.1     KTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFT
pt035028_POPTR_ KTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFN-DHS--IKD---ASALDLQRSA--A
                ********************************:.. :**  *:*   ** ***:*.*  :

AT3G12730.1     TSPLIIGRNMNEMQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEAS----
pt035028_POPTR_ SSSGMMSRSMNEMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQNLA
                :*. ::.*.***********:.*:: ::*::: *  *****::*:*****:*  ..    

AT3G12730.1     ----------------LTKDYSTLFF--------------------DR----------TN
pt035028_POPTR_ SGSYKGMGNQGIPGMGAMKEFGTLNFPAFQDLNIYGGDQLDLQHNMDRPSLDGFMPNNDN
                                  *::.** *                    **           *

AT3G12730.1     IC---------NNTSSIPIPWFED-------HFP-----------------SSSSMDSTL
pt035028_POPTR_ ICLGKKRPSPYDGSGKSPLIWPDDLRLQDLGSGPACLEPQDDPFKGDQIQMAPPSMDRGT
                **         :.:.. *: * :*         *                 :..***   

AT3G12730.1     ILPDINSNFSLQDS-----------------------RS--------------SITKGRT
pt035028_POPTR_ DLDSISDMYEIKPALQGDALDEKKFEASAKLKRPSPRRSPLAAERMSPMINTGAMPQGRN
                 * .*.. :.:: :                       **              ::.:**.

AT3G12730.1     VCLG
pt035028_POPTR_ SPFG
                  :*
BoxShade v3.31 C (beta, 970507) Output
AT3G12730.1     M M Q S R E E I R D D S - - - - - - - - - S S G L V L T T D P K P R L R W T T E L H E R F V D A V T H L G G P E K A T P
pt035028_POPTR_    M F H T K K P S T M N S H D R P M C V Q G D S G L V L T T D P K P R L R W T V E L H E R F V D A V T Q L G G P D K A T P
 
AT3G12730.1     K T I M R V M G V K G L T L Y H L K S H L Q K F R L G K Q P H K E H S Q N H S I C I R D T N R A S M L D L R R N A V F T
pt035028_POPTR_    K T I M R V M G V K G L T L Y H L K S H L Q K F R L G K Q P H K D F N - D H S - - I K D - - - A S A L D L Q R S A - - A
 
AT3G12730.1     T S P L I I G R N M N E M Q M E V Q R R I E E E V V I E R Q V N Q R I A A Q G K Y M E S M L E K A C E T Q E A S - - - -
pt035028_POPTR_    S S S G M M S R S M N E M Q M E V Q R R L H E Q L E V Q R H L Q L R T E A Q G K Y I Q S L L E K A C Q T L A G D Q N L A
 
AT3G12730.1     - - - - - - - - - - - - - - - - L T K D Y S T L F F - - - - - - - - - - - - - - - - - - - - D R - - - - - - - - - - T N
pt035028_POPTR_    S G S Y K G M G N Q G I P G M G A M K E F G T L N F P A F Q D L N I Y G G D Q L D L Q H N M D R P S L D G F M P N N D N
 
AT3G12730.1     I C - - - - - - - - - N N T S S I P I P W F E D - - - - - - - H F P - - - - - - - - - - - - - - - - - S S S S M D S T L
pt035028_POPTR_    I C L G K K R P S P Y D G S G K S P L I W P D D L R L Q D L G S G P A C L E P Q D D P F K G D Q I Q M A P P S M D R G T
 
AT3G12730.1     I L P D I N S N F S L Q D S - - - - - - - - - - - - - - - - - - - - - - - R S - - - - - - - - - - - - - - S I T K G R T
pt035028_POPTR_    D L D S I S D M Y E I K P A L Q G D A L D E K K F E A S A K L K R P S P R R S P L A A E R M S P M I N T G A M P Q G R N
 
AT3G12730.1     V C L G
pt035028_POPTR_    S P F G
 
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