fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G12820.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt001892 not found in 367aa AT1G79180.1 1st_not 0.466814159 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G12820.1     MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWI
pt001892_POPTR_ MGKGRAPCCDKTQVMRGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWI
                **: *******:** *****  *. ** :** *:**:***:*** ***:***********

AT3G12820.1     NYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRL-V
pt001892_POPTR_ NYLRPDVKRGNFSKEEEDTIIKLHQTLGNKWSKIASHFPGRTDNEIKNVWNTHLKKRLTL
                *****.:*****:********:***: *********:********************* :

AT3G12820.1     KRSISSSSSDVTNHSVSSTSSSSSSISSVLQDVIIKSERPNQEEEFGEILVEQMACGFEV
pt001892_POPTR_ KDDDERPKGDELKES-SSTSSSSSTSST-----IVSSGKRNLEME----LYQQKNQGSST
                * . . ...*  :.* ********: *:     *:.* : * * *    * :*   * ..

AT3G12820.1     DAPQSLECLFDDSQVPP--------PISKPDSLQT-------------------------
pt001892_POPTR_ KKPRILEKAKDSS---PREVSNQYRPTKKPKELSSSSISSNNSNITNSSQVDVSKSEDDQ
                . *: **   *.*   *        * .**..*.:                         

AT3G12820.1     -------------HGKS----------------SDHEFWSRL------------------
pt001892_POPTR_ IGSLLNFRGLYDVHSSSEEVNKPEEITAEIPLESDYDFWNMLDSLSYLQSNEVQLENVEA
                             *..*                **::**. *                  

AT3G12820.1     --IEPGFDDYN--------EWLIFLDNQTC------------------------------
pt001892_POPTR_ CQISKFGDAYNIGEVDQNKKWLRYLENELGLDVTKDENQESSLKNAAETLVPENFQYEMP
                  *.   * **        :** :*:*:                                

AT3G12820.1     --------------------
pt001892_POPTR_ LKPAEVHPGTIENFHLWPSL
BoxShade v3.31 C (beta, 970507) Output
AT3G12820.1     M G N R R A P C C D K S Q V K R G P W S D E E S E R L R S F I L K N G H Q N W R S L P K L A G L M R C G K S C R L R W I
pt001892_POPTR_    M G K G R A P C C D K T Q V M R G P W S P A E D L R L I T F I Q K H G H E N W R A L P K Q A G L L R C G K S C R L R W I
 
AT3G12820.1     N Y L R P G L K R G N F T K E E E D T I I H L H Q A Y G N K W S K I A S N F P G R T D N E I K N V W N T H L K K R L - V
pt001892_POPTR_    N Y L R P D V K R G N F S K E E E D T I I K L H Q T L G N K W S K I A S H F P G R T D N E I K N V W N T H L K K R L T L
 
AT3G12820.1     K R S I S S S S S D V T N H S V S S T S S S S S S I S S V L Q D V I I K S E R P N Q E E E F G E I L V E Q M A C G F E V
pt001892_POPTR_    K D D D E R P K G D E L K E S - S S T S S S S S T S S T - - - - - I V S S G K R N L E M E - - - - L Y Q Q K N Q G S S T
 
AT3G12820.1     D A P Q S L E C L F D D S Q V P P - - - - - - - - P I S K P D S L Q T - - - - - - - - - - - - - - - - - - - - - - - - -
pt001892_POPTR_    K K P R I L E K A K D S S - - - P R E V S N Q Y R P T K K P K E L S S S S I S S N N S N I T N S S Q V D V S K S E D D Q
 
AT3G12820.1     - - - - - - - - - - - - - H G K S - - - - - - - - - - - - - - - - S D H E F W S R L - - - - - - - - - - - - - - - - - -
pt001892_POPTR_    I G S L L N F R G L Y D V H S S S E E V N K P E E I T A E I P L E S D Y D F W N M L D S L S Y L Q S N E V Q L E N V E A
 
AT3G12820.1     - - I E P G F D D Y N - - - - - - - - E W L I F L D N Q T C - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt001892_POPTR_    C Q I S K F G D A Y N I G E V D Q N K K W L R Y L E N E L G L D V T K D E N Q E S S L K N A A E T L V P E N F Q Y E M P
 
AT3G12820.1     - - - - - - - - - - - - - - - - - - - -
pt001892_POPTR_    L K P A E V H P G T I E N F H L W P S L
 
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