fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G12820.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm043201 not found in 288aa AT1G79180.1 1st_not 0.453539823 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G12820.1     MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWI
gm043201_Glyma1 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWI
                **: *******:********  *. :* :** * **:***:*** ***:***********

AT3G12820.1     NYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVK
gm043201_Glyma1 NYLRPDVKRGNFTPEEEETIIRLHKALGNKWSKIASGLPGRTDNEIKNVWNTHLKKRLAP
                *****.:****** ***:***:**:* *********.:********************. 

AT3G12820.1     RSISSS----------------------------------------------SSDVTNH-
gm043201_Glyma1 KKVSEQLRNYQWKIKWTRIQKNNCPTNLLTSLRIQKSHQFHCLLLNQTFILEEVDKPNHL
                :.:*..                                              . * .** 

AT3G12820.1     -------------------SVSSTSSSSSSISSVLQDVIIKSERPNQEEEFGEI------
gm043201_Glyma1 IEIPWEPDYDFWKLLDDDNSLGSFQSNEVQLEEGVHDAEAKKWSHDFENEFGVVGGIKES
                                   *:.* .*.. .:.. ::*.  *.   : *:*** :      

AT3G12820.1     -----LVEQMACGFEVDAPQSLECLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRLIEPG
gm043201_Glyma1 SKDHFLPKNYAVEPEMDHTQAFD--FDDID----MARPESELDFGCRLKHKYAV------
                     * :: *   *:* .*:::  *** :    :::*:*   .*   .*::        

AT3G12820.1     FDDYNEWLIFLDNQTC
gm043201_Glyma1 ----------------
BoxShade v3.31 C (beta, 970507) Output
AT3G12820.1     M G N R R A P C C D K S Q V K R G P W S D E E S E R L R S F I L K N G H Q N W R S L P K L A G L M R C G K S C R L R W I
gm043201_Glyma1    M G K G R A P C C D K T Q V K R G P W S P A E D L K L I A F I Q K Y G H E N W R A L P K Q A G L L R C G K S C R L R W I
 
AT3G12820.1     N Y L R P G L K R G N F T K E E E D T I I H L H Q A Y G N K W S K I A S N F P G R T D N E I K N V W N T H L K K R L V K
gm043201_Glyma1    N Y L R P D V K R G N F T P E E E E T I I R L H K A L G N K W S K I A S G L P G R T D N E I K N V W N T H L K K R L A P
 
AT3G12820.1     R S I S S S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S S D V T N H -
gm043201_Glyma1    K K V S E Q L R N Y Q W K I K W T R I Q K N N C P T N L L T S L R I Q K S H Q F H C L L L N Q T F I L E E V D K P N H L
 
AT3G12820.1     - - - - - - - - - - - - - - - - - - - S V S S T S S S S S S I S S V L Q D V I I K S E R P N Q E E E F G E I - - - - - -
gm043201_Glyma1    I E I P W E P D Y D F W K L L D D D N S L G S F Q S N E V Q L E E G V H D A E A K K W S H D F E N E F G V V G G I K E S
 
AT3G12820.1     - - - - - L V E Q M A C G F E V D A P Q S L E C L F D D S Q V P P P I S K P D S L Q T H G K S S D H E F W S R L I E P G
gm043201_Glyma1    S K D H F L P K N Y A V E P E M D H T Q A F D - - F D D I D - - - - M A R P E S E L D F G C R L K H K Y A V - - - - - -
 
AT3G12820.1     F D D Y N E W L I F L D N Q T C
gm043201_Glyma1    - - - - - - - - - - - - - - - -
 
0