fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G13540.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027958 not found in 316aa AT3G13540.1 1st_1st 0.506024096 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G13540.1     MMSCGGKKPVS-------KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPK
pt027958_POPTR_ -----MRKPTSATTAESAAKTTPCCIKVGLKRGPWTPEEDELLVNYIKKEGEGRWRTLPK
                      :**.*        ****** *:*:****** ****:**.:**********:***

AT3G13540.1     RAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDN
pt027958_POPTR_ KAGLLRCGKSCRLRWMNYLRPSVKRGQIADDEEDLILRLHRLLGNRWSLIAGRIPGRTDN
                :************************* *:.******************************

AT3G13540.1     EIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKPEEEVSGGQ------KYPLEPISSSH
pt027958_POPTR_ EIKNYWNTHLSKKLISQGIDPRTHKPLNPQSFDQSKPSLSKANLHQARLKEPIKNIVSSG
                ********** ***: *****:*****:.:.:.:.: .:* .:      * *:: * ** 

AT3G13540.1     TDDTT------VNGGDGDSKNSINV----------FGGEHGY------------------
pt027958_POPTR_ LEEATSGSTRIINRENEYFQNNINAHLDDQYHADHFIASHGYTSLLNYDGTSGMDLKGDQ
                 :::*      :*  :   :*.**.          * ..***                  

AT3G13540.1     --------EDFGFCYDDKFSSFLNSLIND--------VGDPFGNIIPISQPLQMDDCKDG
pt027958_POPTR_ SLGIGEADQDINSGTDDVF-SFLNSLINEEALQQHQILNVPNVNCAPPSS--------DP
                        :*:.   ** * ********:        :. *  *  * *.        * 

AT3G13540.1     IVGASSSSLGHD------------------
pt027958_POPTR_ FVSIAATTFGLGTGWESTLMSSAFNQNESK
                :*. :::::* .
BoxShade v3.31 C (beta, 970507) Output
AT3G13540.1     M M S C G G K K P V S - - - - - - - K K T T P C C T K M G M K R G P W T V E E D E I L V S F I K K E G E G R W R S L P K
pt027958_POPTR_    - - - - - M R K P T S A T T A E S A A K T T P C C I K V G L K R G P W T P E E D E L L V N Y I K K E G E G R W R T L P K
 
AT3G13540.1     R A G L L R C G K S C R L R W M N Y L R P S V K R G G I T S D E E D L I L R L H R L L G N R W S L I A G R I P G R T D N
pt027958_POPTR_    K A G L L R C G K S C R L R W M N Y L R P S V K R G Q I A D D E E D L I L R L H R L L G N R W S L I A G R I P G R T D N
 
AT3G13540.1     E I K N Y W N T H L R K K L L R Q G I D P Q T H K P L D A N N I H K P E E E V S G G Q - - - - - - K Y P L E P I S S S H
pt027958_POPTR_    E I K N Y W N T H L S K K L I S Q G I D P R T H K P L N P Q S F D Q S K P S L S K A N L H Q A R L K E P I K N I V S S G
 
AT3G13540.1     T D D T T - - - - - - V N G G D G D S K N S I N V - - - - - - - - - - F G G E H G Y - - - - - - - - - - - - - - - - - -
pt027958_POPTR_    L E E A T S G S T R I I N R E N E Y F Q N N I N A H L D D Q Y H A D H F I A S H G Y T S L L N Y D G T S G M D L K G D Q
 
AT3G13540.1     - - - - - - - - E D F G F C Y D D K F S S F L N S L I N D - - - - - - - - V G D P F G N I I P I S Q P L Q M D D C K D G
pt027958_POPTR_    S L G I G E A D Q D I N S G T D D V F - S F L N S L I N E E A L Q Q H Q I L N V P N V N C A P P S S - - - - - - - - D P
 
AT3G13540.1     I V G A S S S S L G H D - - - - - - - - - - - - - - - - - -
pt027958_POPTR_    F V S I A A T T F G L G T G W E S T L M S S A F N Q N E S K
 
0