fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G13540.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm053348 not found in 281aa AT3G13540.1 1st_1st 0.429718875 Ia
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G13540.1     MMSCGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRC
gm053348_Glyma1 -----------MGRAPCCSKVGLHRGPWTPREDALLTKYIQTHGEGQWRSLPKRAGLLRC
                              :***:*:*::***** .** :*..:*:..***:*************

AT3G13540.1     GKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN
gm053348_Glyma1 GKSCRLRWMNYLRPDIKRGNITPEEDDLIVRMHSLLGNRWSLIAGRLPGRTDNEIKNYWN
                **************.:***.**.:*:***:*:* ************:*************

AT3G13540.1     THLRKKLLRQGIDPQTHKPLDANNIHKPE------------EEVSGGQK---YPLEPI--
gm053348_Glyma1 THLSKKLRNQGTDPKTHDKL----TEAPEKKKGKKKNKQKNENNKGSEKTLVYLPKPIRV
                *** *** .** **:**. *     . **            *: .*.:*   *  :**  

AT3G13540.1     -----------------SSSHTDDTT-------------VN-----GGDGDSKNSINVFG
gm053348_Glyma1 KALSSCIPRTDSTLTLNSNSATASTSEEKVQSPEAEVKEVNMVWGVGDDADN-GGIEIFF
                                 *.* * .*:             **     *.*.*. ..*::* 

AT3G13540.1     GEH--------GYEDFGFCYDDKFSSFLNSLINDVGDPFGNIIPIS----QPLQMDDCKD
gm053348_Glyma1 GEDHDLVNNTASYEE---CYSDVHT-----------DDHGTLEKLYEEYLQLLNVEEKPD
                **.        .**:   **.* .:           * .*.:  :     * *::::  *

AT3G13540.1     GIVGASSSSLGHD
gm053348_Glyma1 ELDSFAQSLLV--
                 : . :.* *
BoxShade v3.31 C (beta, 970507) Output
AT3G13540.1     M M S C G G K K P V S K K T T P C C T K M G M K R G P W T V E E D E I L V S F I K K E G E G R W R S L P K R A G L L R C
gm053348_Glyma1    - - - - - - - - - - - M G R A P C C S K V G L H R G P W T P R E D A L L T K Y I Q T H G E G Q W R S L P K R A G L L R C
 
AT3G13540.1     G K S C R L R W M N Y L R P S V K R G G I T S D E E D L I L R L H R L L G N R W S L I A G R I P G R T D N E I K N Y W N
gm053348_Glyma1    G K S C R L R W M N Y L R P D I K R G N I T P E E D D L I V R M H S L L G N R W S L I A G R L P G R T D N E I K N Y W N
 
AT3G13540.1     T H L R K K L L R Q G I D P Q T H K P L D A N N I H K P E - - - - - - - - - - - - E E V S G G Q K - - - Y P L E P I - -
gm053348_Glyma1    T H L S K K L R N Q G T D P K T H D K L - - - - T E A P E K K K G K K K N K Q K N E N N K G S E K T L V Y L P K P I R V
 
AT3G13540.1     - - - - - - - - - - - - - - - - - S S S H T D D T T - - - - - - - - - - - - - V N - - - - - G G D G D S K N S I N V F G
gm053348_Glyma1    K A L S S C I P R T D S T L T L N S N S A T A S T S E E K V Q S P E A E V K E V N M V W G V G D D A D N - G G I E I F F
 
AT3G13540.1     G E H - - - - - - - - G Y E D F G F C Y D D K F S S F L N S L I N D V G D P F G N I I P I S - - - - Q P L Q M D D C K D
gm053348_Glyma1    G E D H D L V N N T A S Y E E - - - C Y S D V H T - - - - - - - - - - - D D H G T L E K L Y E E Y L Q L L N V E E K P D
 
AT3G13540.1     G I V G A S S S S L G H D
gm053348_Glyma1    E L D S F A Q S L L V - -
 
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