fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G15540.1 GLEITELRLGLPGRDV at 11/197 in AT3G15540.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022022 GLEITELRLGLPDAEH in 12/195 AT3G15540.1 1st_1st 0.564356435 Ia
HKGYSDLALALDKLFG in 112/195
Pt028706 not found in 189aa AT3G15540.1 1st_1st 0.549504950 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G15540.1     MEKEGLGLEITELRLGLPGRDV-----AEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSG
pt028706_POPTR_ MAQP-LGLEITELRLGPPGSEN-----GPKNEKKRVFSELS---GEANS--------TTD
gm022022_Glyma0 MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENS--------SSG
                * :  *********** *. :        *  ***.*:*:.   .  **        ::.

AT3G15540.1     GDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEA---STTKVGLGYVKVSMDGVPYLRKM
pt028706_POPTR_ G--RKTQTT----SQVVGWPPVCSYRKKNSFNEKDSHETSKI---YVKVSMDGAPFLRKV
gm022022_Glyma0 GGDRKMETN---KSQVVGWPPVCSYRKKNSMNEG----ASKM---YVKVSMDGAPFLRKI
                *  .* : .    ***************** :*     ::*:   ********.*:***:

AT3G15540.1     DLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLE
pt028706_POPTR_ DLGMHKEYSDLVVALEKLFGCFGIGKALKDTDDCEYVPIYEDKDGDWMLVGDVPWEMFIE
gm022022_Glyma0 DLGLHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFME
                ***  : *.**..**:****  *:  ***: *:.*:*.***********.***** **:*

AT3G15540.1     SCKRLRIMKRSDATGFGLQPRGVDE----------
pt028706_POPTR_ SCKRLRIMKRSEAKGFGLQPRGALQQGNISKDDRD
gm022022_Glyma0 SCKRLRIMKKSDAKGFGLQPKGSL-KGFIESAAK-
                *********:*:*.******:*
BoxShade v3.31 C (beta, 970507) Output
AT3G15540.1     M E K E G L G L E I T E L R L G L P G R D V - - - - - A E K M M K K R A F T E M N M T S S G S N S D Q C E S G V V S S G
pt028706_POPTR_    M A Q P - L G L E I T E L R L G P P G S E N - - - - - G P K N E K K R V F S E L S - - - G E A N S - - - - - - - - T T D
gm022022_Glyma0    M A K E G L G L E I T E L R L G L P D A E H Q V S V V N K K N E K K R A F S E I D D G V G D E N S - - - - - - - - S S G
 
AT3G15540.1     G D A E K V N D S P A A K S Q V V G W P P V C S Y R K K N S C K E A - - - S T T K V G L G Y V K V S M D G V P Y L R K M
pt028706_POPTR_    G - - R K T Q T T - - - - S Q V V G W P P V C S Y R K K N S F N E K D S H E T S K I - - - Y V K V S M D G A P F L R K V
gm022022_Glyma0    G G D R K M E T N - - - K S Q V V G W P P V C S Y R K K N S M N E G - - - - A S K M - - - Y V K V S M D G A P F L R K I
 
AT3G15540.1     D L G S S Q G Y D D L A F A L D K L F G F R G I G V A L K D G D N C E Y V T I Y E D K D G D W M L A G D V P W G M F L E
pt028706_POPTR_    D L G M H K E Y S D L V V A L E K L F G C F G I G K A L K D T D D C E Y V P I Y E D K D G D W M L V G D V P W E M F I E
gm022022_Glyma0    D L G L H K G Y S D L A L A L D K L F G C Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E
 
AT3G15540.1     S C K R L R I M K R S D A T G F G L Q P R G V D E - - - - - - - - - -
pt028706_POPTR_    S C K R L R I M K R S E A K G F G L Q P R G A L Q Q G N I S K D D R D
gm022022_Glyma0    S C K R L R I M K K S D A K G F G L Q P K G S L - K G F I E S A A K -
 
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