Input
| Putative repression domain
|
|
AT3G15540.1 |
GLEITELRLGLPGRDV at 11/197 in AT3G15540.1 |
|
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt010911 |
GLEITELRLGLPGSDD in 11/184 |
AT3G15540.1 |
not_1st |
0.507425742 |
II |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)
AT3G15540.1 MEKEGLGLEITELRLGLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEK
pt010911_POPTR_ -MAQPLGLEITELRLGLPGSDDGHKNDKKRVFSEV-------------SGEANSTTDDRK
: ************** * ..* ***.*:*: ** ..* * .*
AT3G15540.1 VNDSPAAKSQVVGWPPVCSYRKKNSCKEA----STTKVGLGYVKVSMDGVPYLRKMDLGS
pt010911_POPTR_ VQ----TKSQVVGWPPVCSYRKNISFNERDRHHETSKI---YVKVSMDGAPFLRKIDLGM
*: :***************: * :* .*:*: ********.*:***:***
AT3G15540.1 SQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKR
pt010911_POPTR_ HKEYSDLVVALERLFGCYGIGKALKD----EYVPIYEDKDGDWMLVGDVPWEMFFESCKR
: *.**..**::*** *** **** ***.***********.***** **:*****
AT3G15540.1 LRIMKRSDATGFGLQPRGV------DE--
pt010911_POPTR_ LRIMKSSEAKGFGLQPRGALKGISKDERH
***** *:*.********. **
BoxShade v3.31 C (beta, 970507) Output
AT3G15540.1 |
M |
E |
K |
E |
G |
L |
G |
L |
E |
I |
T |
E |
L |
R |
L |
G |
L |
P |
G |
R |
D |
V |
A |
E |
K |
M |
M |
K |
K |
R |
A |
F |
T |
E |
M |
N |
M |
T |
S |
S |
G |
S |
N |
S |
D |
Q |
C |
E |
S |
G |
V |
V |
S |
S |
G |
G |
D |
A |
E |
K |
pt010911_POPTR_ |
- |
M |
A |
Q |
P |
L |
G |
L |
E |
I |
T |
E |
L |
R |
L |
G |
L |
P |
G |
S |
D |
D |
G |
H |
K |
N |
D |
K |
K |
R |
V |
F |
S |
E |
V |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
S |
G |
E |
A |
N |
S |
T |
T |
D |
D |
R |
K |
|
AT3G15540.1 |
V |
N |
D |
S |
P |
A |
A |
K |
S |
Q |
V |
V |
G |
W |
P |
P |
V |
C |
S |
Y |
R |
K |
K |
N |
S |
C |
K |
E |
A |
- |
- |
- |
- |
S |
T |
T |
K |
V |
G |
L |
G |
Y |
V |
K |
V |
S |
M |
D |
G |
V |
P |
Y |
L |
R |
K |
M |
D |
L |
G |
S |
pt010911_POPTR_ |
V |
Q |
- |
- |
- |
- |
T |
K |
S |
Q |
V |
V |
G |
W |
P |
P |
V |
C |
S |
Y |
R |
K |
N |
I |
S |
F |
N |
E |
R |
D |
R |
H |
H |
E |
T |
S |
K |
I |
- |
- |
- |
Y |
V |
K |
V |
S |
M |
D |
G |
A |
P |
F |
L |
R |
K |
I |
D |
L |
G |
M |
|
AT3G15540.1 |
S |
Q |
G |
Y |
D |
D |
L |
A |
F |
A |
L |
D |
K |
L |
F |
G |
F |
R |
G |
I |
G |
V |
A |
L |
K |
D |
G |
D |
N |
C |
E |
Y |
V |
T |
I |
Y |
E |
D |
K |
D |
G |
D |
W |
M |
L |
A |
G |
D |
V |
P |
W |
G |
M |
F |
L |
E |
S |
C |
K |
R |
pt010911_POPTR_ |
H |
K |
E |
Y |
S |
D |
L |
V |
V |
A |
L |
E |
R |
L |
F |
G |
C |
Y |
G |
I |
G |
K |
A |
L |
K |
D |
- |
- |
- |
- |
E |
Y |
V |
P |
I |
Y |
E |
D |
K |
D |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
E |
M |
F |
F |
E |
S |
C |
K |
R |
|
AT3G15540.1 |
L |
R |
I |
M |
K |
R |
S |
D |
A |
T |
G |
F |
G |
L |
Q |
P |
R |
G |
V |
- |
- |
- |
- |
- |
- |
D |
E |
- |
- |
pt010911_POPTR_ |
L |
R |
I |
M |
K |
S |
S |
E |
A |
K |
G |
F |
G |
L |
Q |
P |
R |
G |
A |
L |
K |
G |
I |
S |
K |
D |
E |
R |
H |
|
|