fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G15540.1 GLEITELRLGLPGRDV at 11/197 in AT3G15540.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm017314 GLEITELRLGLPDAEH in 12/187 AT3G15540.1 not_1st 0.561881188 II
HKGYSDLALALDKLFG in 104/187
Gm040797 LEITTELRLGLPGGEL in 13/187 AT3G15540.1 not_1st 0.539603960 II
HKGYSELALALEKFFG in 104/187
Gm038311 LEITTELRLGLPGGEL in 13/189 AT3G15540.1 not_1st 0.517326732 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G15540.1     MEKEGLGLEI-TELRLGLPGRD---VAEKMM--KKRAFTEMNMTSSGSNSDQCESGVVSS
gm038311_Glyma1 MEKEAVGLEITTELRLGLPGGE---LPDKNEKIKKRVFSEIQAHDDDENS--------SS
gm017314_Glyma0 MAKEGLGLEI-TELRLGLPDAEHVTVVNKNE--KKRAFSQI----DDENS--------SS
gm040797_Glyma1 MEKEGVGLEITTELRLGLPGGE---LPDKNEKMKKRVFSEI--NQGDENS--------SS
                * **.:**** ********. :   : :*    ***.*:::    ...**        **

AT3G15540.1     GGDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDL
gm038311_Glyma1 EQD-RKIQT----KNQVVGWPPVCSYRKKNTVNE---TKM---YVKVSMDGAPFLRKIDL
gm017314_Glyma0 GGD-RKIKTN---KSQVVGWPPVCSYRKKNSMNEG--SKM---YVKVSMDGAPFLRKIDL
gm040797_Glyma1 EED-RKIQT----KNQVVGWPPVCSYRKKNTINE---TKM---YVKVSMDGAPFLRKIDL
                  * .*::     *.***************: :*   :*:   ********.*:***:**

AT3G15540.1     GSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLESC
gm038311_Glyma1 AMHKGYSELVLALEKFFGCYGIREALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIESC
gm017314_Glyma0 GLHKGYSDLALALDKLFGSYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESC
gm040797_Glyma1 AMHKGYSELALALEKFFGCYGIGSALKDEENVEQVPIYEDKDGDWMLVGDVPWEMFIESC
                .  :**.:*.:**:*:**  *:  ***: :* * *.***********.***** **:***

AT3G15540.1     KRLRIMKRSDATGFGLQPRGVDE--------
gm038311_Glyma1 KRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK
gm017314_Glyma0 KRLRIMKRSDAKGFGLQPKGSLKGFIESAAK
gm040797_Glyma1 KRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK
                ***********.**.***:*  :
BoxShade v3.31 C (beta, 970507) Output
AT3G15540.1     M E K E G L G L E I - T E L R L G L P G R D - - - V A E K M M - - K K R A F T E M N M T S S G S N S D Q C E S G V V S S
gm038311_Glyma1    M E K E A V G L E I T T E L R L G L P G G E - - - L P D K N E K I K K R V F S E I Q A H D D D E N S - - - - - - - - S S
gm017314_Glyma0    M A K E G L G L E I - T E L R L G L P D A E H V T V V N K N E - - K K R A F S Q I - - - - D D E N S - - - - - - - - S S
gm040797_Glyma1    M E K E G V G L E I T T E L R L G L P G G E - - - L P D K N E K M K K R V F S E I - - N Q G D E N S - - - - - - - - S S
 
AT3G15540.1     G G D A E K V N D S P A A K S Q V V G W P P V C S Y R K K N S C K E A S T T K V G L G Y V K V S M D G V P Y L R K M D L
gm038311_Glyma1    E Q D - R K I Q T - - - - K N Q V V G W P P V C S Y R K K N T V N E - - - T K M - - - Y V K V S M D G A P F L R K I D L
gm017314_Glyma0    G G D - R K I K T N - - - K S Q V V G W P P V C S Y R K K N S M N E G - - S K M - - - Y V K V S M D G A P F L R K I D L
gm040797_Glyma1    E E D - R K I Q T - - - - K N Q V V G W P P V C S Y R K K N T I N E - - - T K M - - - Y V K V S M D G A P F L R K I D L
 
AT3G15540.1     G S S Q G Y D D L A F A L D K L F G F R G I G V A L K D G D N C E Y V T I Y E D K D G D W M L A G D V P W G M F L E S C
gm038311_Glyma1    A M H K G Y S E L V L A L E K F F G C Y G I R E A L K D A E N A E H V P I Y E D K D G D W M L V G D V P W E M F I E S C
gm017314_Glyma0    G L H K G Y S D L A L A L D K L F G S Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E S C
gm040797_Glyma1    A M H K G Y S E L A L A L E K F F G C Y G I G S A L K D E E N V E Q V P I Y E D K D G D W M L V G D V P W E M F I E S C
 
AT3G15540.1     K R L R I M K R S D A T G F G L Q P R G V D E - - - - - - - -
gm038311_Glyma1    K R L R I M K R S D A K G F D L Q P K G S L K G F I E G V T K
gm017314_Glyma0    K R L R I M K R S D A K G F G L Q P K G S L K G F I E S A A K
gm040797_Glyma1    K R L R I M K R S D A K G F D L Q P K G S L K G F I E G V T K
 
0