fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G15540.1 GLEITELRLGLPGRDV at 11/197 in AT3G15540.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022022 GLEITELRLGLPDAEH in 12/195 AT3G15540.1 1st_1st 0.564356435 Ia
HKGYSDLALALDKLFG in 112/195
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G15540.1     MEKEGLGLEITELRLGLPGRD-----VAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSG
gm022022_Glyma0 MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENS--------SSG
                * ****************. :     * :*  *****:*::   ...**        ***

AT3G15540.1     GDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLG
gm022022_Glyma0 GGDRKMETN---KSQVVGWPPVCSYRKKNSMNEGASKM----YVKVSMDGAPFLRKIDLG
                *. .*:: .   ****************** :*.::.     ********.*:***:***

AT3G15540.1     SSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLESCK
gm022022_Glyma0 LHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCK
                  :**.***:*******  *:  ***:.**.*:*.***********.***** **:****

AT3G15540.1     RLRIMKRSDATGFGLQPRGVDE--------
gm022022_Glyma0 RLRIMKKSDAKGFGLQPKGSLKGFIESAAK
                ******:***.******:*  :
BoxShade v3.31 C (beta, 970507) Output
AT3G15540.1     M E K E G L G L E I T E L R L G L P G R D - - - - - V A E K M M K K R A F T E M N M T S S G S N S D Q C E S G V V S S G
gm022022_Glyma0    M A K E G L G L E I T E L R L G L P D A E H Q V S V V N K K N E K K R A F S E I D D G V G D E N S - - - - - - - - S S G
 
AT3G15540.1     G D A E K V N D S P A A K S Q V V G W P P V C S Y R K K N S C K E A S T T K V G L G Y V K V S M D G V P Y L R K M D L G
gm022022_Glyma0    G G D R K M E T N - - - K S Q V V G W P P V C S Y R K K N S M N E G A S K M - - - - Y V K V S M D G A P F L R K I D L G
 
AT3G15540.1     S S Q G Y D D L A F A L D K L F G F R G I G V A L K D G D N C E Y V T I Y E D K D G D W M L A G D V P W G M F L E S C K
gm022022_Glyma0    L H K G Y S D L A L A L D K L F G C Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E S C K
 
AT3G15540.1     R L R I M K R S D A T G F G L Q P R G V D E - - - - - - - -
gm022022_Glyma0    R L R I M K K S D A K G F G L Q P K G S L K G F I E S A A K
 
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