fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G15540.1 GLEITELRLGLPGRDV at 11/197 in AT3G15540.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022022 GLEITELRLGLPDAEH in 12/195 AT3G15540.1 1st_1st 0.564356435 Ia
HKGYSDLALALDKLFG in 112/195
Gm017314 GLEITELRLGLPDAEH in 12/187 AT3G15540.1 not_1st 0.561881188 II
HKGYSDLALALDKLFG in 104/187
Gm040797 LEITTELRLGLPGGEL in 13/187 AT3G15540.1 not_1st 0.539603960 II
HKGYSELALALEKFFG in 104/187
Gm038311 LEITTELRLGLPGGEL in 13/189 AT3G15540.1 not_1st 0.517326732 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G15540.1     MEKEGLGLEI-TELRLGLPGRD-----VAEKMM--KKRAFTEMNMTSSGSNSDQCESGVV
gm038311_Glyma1 MEKEAVGLEITTELRLGLPGGE-----LPDKNEKIKKRVFSEIQAHDDDENS--------
gm040797_Glyma1 MEKEGVGLEITTELRLGLPGGE-----LPDKNEKMKKRVFSEI--NQGDENS--------
gm022022_Glyma0 MAKEGLGLEI-TELRLGLPDAEHQVSVVNKKNE--KKRAFSEIDDGVGDENS--------
gm017314_Glyma0 MAKEGLGLEI-TELRLGLPDAEH-VTVVN-KNE--KKRAFSQID----DENS--------
                * **.:**** ********. :     :  *    ***.*:::     ..**        

AT3G15540.1     SSGGDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKM
gm038311_Glyma1 SS-EQDRKIQT----KNQVVGWPPVCSYRKKNTVNE---TKM---YVKVSMDGAPFLRKI
gm040797_Glyma1 SS-EEDRKIQT----KNQVVGWPPVCSYRKKNTINE---TKM---YVKVSMDGAPFLRKI
gm022022_Glyma0 SSGGGDRKMETN---KSQVVGWPPVCSYRKKNSMNEG-ASKM---YVKVSMDGAPFLRKI
gm017314_Glyma0 SS-GGDRKIKTN---KSQVVGWPPVCSYRKKNSMNEG--SKM---YVKVSMDGAPFLRKI
                **    .*::     *.***************: :*   :*:   ********.*:***:

AT3G15540.1     DLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLE
gm038311_Glyma1 DLAMHKGYSELVLALEKFFGCYGIREALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIE
gm040797_Glyma1 DLAMHKGYSELALALEKFFGCYGIGSALKDEENVEQVPIYEDKDGDWMLVGDVPWEMFIE
gm022022_Glyma0 DLGLHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFME
gm017314_Glyma0 DLGLHKGYSDLALALDKLFGSYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFME
                **.  :**.:*.:**:*:**  *:  ***: :* * *.***********.***** **:*

AT3G15540.1     SCKRLRIMKRSDATGFGLQPRGVDE--------
gm038311_Glyma1 SCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK
gm040797_Glyma1 SCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK
gm022022_Glyma0 SCKRLRIMKKSDAKGFGLQPKGSLKGFIESAAK
gm017314_Glyma0 SCKRLRIMKRSDAKGFGLQPKGSLKGFIESAAK
                *********:***.**.***:*  :
BoxShade v3.31 C (beta, 970507) Output
AT3G15540.1     M E K E G L G L E I - T E L R L G L P G R D - - - - - V A E K M M - - K K R A F T E M N M T S S G S N S D Q C E S G V V
gm038311_Glyma1    M E K E A V G L E I T T E L R L G L P G G E - - - - - L P D K N E K I K K R V F S E I Q A H D D D E N S - - - - - - - -
gm040797_Glyma1    M E K E G V G L E I T T E L R L G L P G G E - - - - - L P D K N E K M K K R V F S E I - - N Q G D E N S - - - - - - - -
gm022022_Glyma0    M A K E G L G L E I - T E L R L G L P D A E H Q V S V V N K K N E - - K K R A F S E I D D G V G D E N S - - - - - - - -
gm017314_Glyma0    M A K E G L G L E I - T E L R L G L P D A E H - V T V V N - K N E - - K K R A F S Q I D - - - - D E N S - - - - - - - -
 
AT3G15540.1     S S G G D A E K V N D S P A A K S Q V V G W P P V C S Y R K K N S C K E A S T T K V G L G Y V K V S M D G V P Y L R K M
gm038311_Glyma1    S S - E Q D R K I Q T - - - - K N Q V V G W P P V C S Y R K K N T V N E - - - T K M - - - Y V K V S M D G A P F L R K I
gm040797_Glyma1    S S - E E D R K I Q T - - - - K N Q V V G W P P V C S Y R K K N T I N E - - - T K M - - - Y V K V S M D G A P F L R K I
gm022022_Glyma0    S S G G G D R K M E T N - - - K S Q V V G W P P V C S Y R K K N S M N E G - A S K M - - - Y V K V S M D G A P F L R K I
gm017314_Glyma0    S S - G G D R K I K T N - - - K S Q V V G W P P V C S Y R K K N S M N E G - - S K M - - - Y V K V S M D G A P F L R K I
 
AT3G15540.1     D L G S S Q G Y D D L A F A L D K L F G F R G I G V A L K D G D N C E Y V T I Y E D K D G D W M L A G D V P W G M F L E
gm038311_Glyma1    D L A M H K G Y S E L V L A L E K F F G C Y G I R E A L K D A E N A E H V P I Y E D K D G D W M L V G D V P W E M F I E
gm040797_Glyma1    D L A M H K G Y S E L A L A L E K F F G C Y G I G S A L K D E E N V E Q V P I Y E D K D G D W M L V G D V P W E M F I E
gm022022_Glyma0    D L G L H K G Y S D L A L A L D K L F G C Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E
gm017314_Glyma0    D L G L H K G Y S D L A L A L D K L F G S Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E
 
AT3G15540.1     S C K R L R I M K R S D A T G F G L Q P R G V D E - - - - - - - -
gm038311_Glyma1    S C K R L R I M K R S D A K G F D L Q P K G S L K G F I E G V T K
gm040797_Glyma1    S C K R L R I M K R S D A K G F D L Q P K G S L K G F I E G V T K
gm022022_Glyma0    S C K R L R I M K K S D A K G F G L Q P K G S L K G F I E S A A K
gm017314_Glyma0    S C K R L R I M K R S D A K G F G L Q P K G S L K G F I E S A A K
 
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