fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16350.1 SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm038242 GGGGVKLFGVRLTDG in 27/356 AT3G16350.1 not_1st 0.474402730 II
GKSQPSLNLSLKSEFE in 208/356
Pt028574 PLSGVKLFGVRLTDG in 36/367 AT3G16350.1 not_1st 0.460750853 II
VDALPSLNLSLKPEFE in 205/367
Get sequence file
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G16350.1     MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSS--SAVKLFGVRLTDGS
gm038242_Glyma1 MTRRCSHCSNNGHNSRTCPSRGG-----------------------GGVKLFGVRLTDGS
pt028574_POPTR_ MTRRCSHCSNNGHNSRTCPTRSSL--------------ASSSSSPLSGVKLFGVRLTDGS
                *******************:*..                       ..************

AT3G16350.1     IIKKSASMGNLSALAVAAAAATHHRLSPSSPL--ATSNLN-DSPLSDHARYSNLHHNEGY
gm038242_Glyma1 IIKKSASMGNLN-LSSAAAHHQFHSSPSSSNLAAAPSSPNPSSPCSDP--------PQGY
pt028574_POPTR_ IIKKSASMGNL------SAH--YHSSSS------AAASPNPDSPVSDRV------HDDGY
                ***********      :*   .*  ..      *.:. * .** **          :**

AT3G16350.1     LSDDP-AHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQ
gm038242_Glyma1 LSDDP-AHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQ
pt028574_POPTR_ LSDDPAAHASCSTSRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQ
                ***** ** *  : ***:**:*************:*************:**:*.******

AT3G16350.1     VASHAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSYL
gm038242_Glyma1 VASHAQKYFIRQSHATRRKRRSSLFDMVPD-MSSDQPSVPEEQVLLPPSQNSQPCNGKSQ
pt028574_POPTR_ VASHAQKFFIRQSNATRRKRRSSLFDMVPE-MVYPQP-VPEEQE-LPSSQAGDDDNVDAL
                *******:***:: ::************.: *   .. . ***    .*   :  : .  

AT3G16350.1     PSLELSLNNTTEAEEVVATAPRQEKSQEAIEPSN-------GVSPMLVPG----------
gm038242_Glyma1 PSLNLSLKSEFE--------PMETTSQENAQQTNETMMGSIGLTPM-APH----------
pt028574_POPTR_ PSLNLSLKPEFE--------PMDTESQELVKERDKTVMGFSEFKPS-VPSSSEFVPIVSG
                ***:***:   *        * :  ***  :  :        ..*  .*           

AT3G16350.1     --------GFFPPCFPVTYTIWLPASLH-GTEHALNAETSSQQHQVLKPKPGFAKERVNM
gm038242_Glyma1 --------GFFPAYLPVPFPMW-PSTVAPPFEEVKGGETS--HHQIHKPIPVIPKEPVNV
pt028574_POPTR_ SNEFTAVPGFFPAYMPVPYPYWAPNTT--PFEEGKGAATS--HHEVLKPVPSILKEPFNV
                        ****. :**.:. * * :     *.  .. **  :*:: ** * : ** .*:

AT3G16350.1     DELVGMSQLSIGMATRHETETSPSPLSLRL--EPSRPSAFHSNGSVNGADLSKGN--SAI
gm038242_Glyma1 DELVGMSHLSIGEAKVRDRE--PSPLSLKLLGEPSRQSAFHANAPVGTSDLNNGKD-NAI
pt028574_POPTR_ DELVGMSHLSLGEIERRHRE--PSPLSLKLIGEAPRQSAFHASAPASGSDLSGTKRLNS-
                *******:**:*    :. *  ******:*  *..* ****:..... :**.  :  .: 

AT3G16350.1     QAI
gm038242_Glyma1 QAV
pt028574_POPTR_ ---
BoxShade v3.31 C (beta, 970507) Output
AT3G16350.1     M T R R C S H C S N N G H N S R T C P T R G G G T C G G S G G G G G G G G G G G S G S S - - S A V K L F G V R L T D G S
gm038242_Glyma1    M T R R C S H C S N N G H N S R T C P S R G G - - - - - - - - - - - - - - - - - - - - - - - G G V K L F G V R L T D G S
pt028574_POPTR_    M T R R C S H C S N N G H N S R T C P T R S S L - - - - - - - - - - - - - - A S S S S S P L S G V K L F G V R L T D G S
 
AT3G16350.1     I I K K S A S M G N L S A L A V A A A A A T H H R L S P S S P L - - A T S N L N - D S P L S D H A R Y S N L H H N E G Y
gm038242_Glyma1    I I K K S A S M G N L N - L S S A A A H H Q F H S S P S S S N L A A A P S S P N P S S P C S D P - - - - - - - - P Q G Y
pt028574_POPTR_    I I K K S A S M G N L - - - - - - S A H - - Y H S S S S - - - - - - A A A S P N P D S P V S D R V - - - - - - H D D G Y
 
AT3G16350.1     L S D D P - A H G S G S S H R R G E R K R G V P W T E E E H R L F L V G L Q K L G K G D W R G I S R N Y V T S R T P T Q
gm038242_Glyma1    L S D D P - A H V S T F A N R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T Q
pt028574_POPTR_    L S D D P A A H A S C S T S R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T Q
 
AT3G16350.1     V A S H A Q K Y F I R H T S S S R R K R R S S L F D M V T D E M V T D S S P T Q E E Q T L N G S S P S K E P E K K S Y L
gm038242_Glyma1    V A S H A Q K Y F I R Q S H A T R R K R R S S L F D M V P D - M S S D Q P S V P E E Q V L L P P S Q N S Q P C N G K S Q
pt028574_POPTR_    V A S H A Q K F F I R Q S N A T R R K R R S S L F D M V P E - M V Y P Q P - V P E E Q E - L P S S Q A G D D D N V D A L
 
AT3G16350.1     P S L E L S L N N T T E A E E V V A T A P R Q E K S Q E A I E P S N - - - - - - - G V S P M L V P G - - - - - - - - - -
gm038242_Glyma1    P S L N L S L K S E F E - - - - - - - - P M E T T S Q E N A Q Q T N E T M M G S I G L T P M - A P H - - - - - - - - - -
pt028574_POPTR_    P S L N L S L K P E F E - - - - - - - - P M D T E S Q E L V K E R D K T V M G F S E F K P S - V P S S S E F V P I V S G
 
AT3G16350.1     - - - - - - - - G F F P P C F P V T Y T I W L P A S L H - G T E H A L N A E T S S Q Q H Q V L K P K P G F A K E R V N M
gm038242_Glyma1    - - - - - - - - G F F P A Y L P V P F P M W - P S T V A P P F E E V K G G E T S - - H H Q I H K P I P V I P K E P V N V
pt028574_POPTR_    S N E F T A V P G F F P A Y M P V P Y P Y W A P N T T - - P F E E G K G A A T S - - H H E V L K P V P S I L K E P F N V
 
AT3G16350.1     D E L V G M S Q L S I G M A T R H E T E T S P S P L S L R L - - E P S R P S A F H S N G S V N G A D L S K G N - - S A I
gm038242_Glyma1    D E L V G M S H L S I G E A K V R D R E - - P S P L S L K L L G E P S R Q S A F H A N A P V G T S D L N N G K D - N A I
pt028574_POPTR_    D E L V G M S H L S L G E I E R R H R E - - P S P L S L K L I G E A P R Q S A F H A S A P A S G S D L S G T K R L N S -
 
AT3G16350.1     Q A I
gm038242_Glyma1    Q A V
pt028574_POPTR_    - - -
 
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