fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16350.1 SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm040883 GGGGVKLFGVRLTDG in 27/360 AT3G16350.1 1st_1st 0.481228668 Ia
GKSQPSLNLSLKSEFE in 212/360
Pt028573 PLSGVKLFGVRLTDG in 36/369 AT3G16350.1 1st_1st 0.465870307 Ia
VDALPSLNLSLKPEFE in 205/369
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G16350.1     MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSS--SAVKLFGVRLTDGS
pt028573_POPTR_ MTRRCSHCSNNGHNSRTCPTRSSL--------------ASSSSSPLSGVKLFGVRLTDGS
gm040883_Glyma1 MTRRCSHCTNNGHNSRTCPSRGG-----------------------GGVKLFGVRLTDGS
                ********:**********:*..                       ..************

AT3G16350.1     IIKKSASMGNLSALAVAAAAATHH---RLSPSS---PLATSNLNDSPLSDHARYSNLHHN
pt028573_POPTR_ IIKKSASMGNLSAHYHSSSSAAA-----------------SPNPDSPVSDRV------HD
gm040883_Glyma1 IIKKSASMGNLNLSSSSSSAAAAHLQFRSSPSSSNLPAASSPNPSSPCSDP--------P
                ***********.    ::::*:                  *   .** **          

AT3G16350.1     EGYLSDDP-AHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRT
pt028573_POPTR_ DGYLSDDPAAHASCSTSRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRT
gm040883_Glyma1 QGYLSDDP-AHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRT
                :******* ** *  : ***:**:*************:*************:**:*.***

AT3G16350.1     PTQVASHAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKK
pt028573_POPTR_ PTQVASHAQKFFIRQSNATRRKRRSSLFDMVPE-MVYPQP-VPEEQE-LPSSQAGDDDNV
gm040883_Glyma1 PTQVASHAQKYFIRQSHATRRKRRSSLFDMVPD-MSSDQPSVPEEQVLLPPPENSQPCNG
                **********:***:: ::************.: *   .. . ***    ..   :  : 

AT3G16350.1     SYLPSLELSLNNTTEAEEVVATAPRQEKSQEAIEPSNG-------VSPMLVPG-------
pt028573_POPTR_ DALPSLNLSLKPEFE--------PMDTESQELVKERDKTVMGFSEFKPS-VPSSSEFVPI
gm040883_Glyma1 KSQPSLNLSLKSEFE--------PMETTSQENVQQTNEPMMGSNRLTPM-APH-------
                .  ***:***:   *        * :  *** ::  :        ..*  .*        

AT3G16350.1     -----------GFFPPCFPVTYTIWLPAS-LHGTEHALNAETSSQQHQVLKPKPGFAKER
pt028573_POPTR_ VSGSNEFTAVPGFFPAYMPVPYPYWAPNT--TPFEEGKGAATS--HHEVLKPVPSILKEP
gm040883_Glyma1 -----------GCFPAYLPVPFPVW-PSTWVHPFEEVKGGETC--HHQIHKPIPVIPKEP
                           * **. :**.:. * * :     *.  .. *.  :*:: ** * : ** 

AT3G16350.1     VNMDELVGMSQLSIGMATRHETETSPSPLSLRL--EPSRPSAFHSNGSVNGADLSKG-NS
pt028573_POPTR_ FNVDELVGMSHLSLGEIERRHRE--PSPLSLKLIGEAPRQSAFHASAPASGSDLSNGGTK
gm040883_Glyma1 VNVDELVGMSHLSIGEAQVRDRE--PSPLSIKLLGEPSRQSAFHANVPVGSSDLNNGKDN
                .*:*******:**:*    :. *  *****::*  *..* ****:. ....:**.:*  .

AT3G16350.1     AIQAI
pt028573_POPTR_ RLNS-
gm040883_Glyma1 AIQAV
                 :::
BoxShade v3.31 C (beta, 970507) Output
AT3G16350.1     M T R R C S H C S N N G H N S R T C P T R G G G T C G G S G G G G G G G G G G G S G S S - - S A V K L F G V R L T D G S
pt028573_POPTR_    M T R R C S H C S N N G H N S R T C P T R S S L - - - - - - - - - - - - - - A S S S S S P L S G V K L F G V R L T D G S
gm040883_Glyma1    M T R R C S H C T N N G H N S R T C P S R G G - - - - - - - - - - - - - - - - - - - - - - - G G V K L F G V R L T D G S
 
AT3G16350.1     I I K K S A S M G N L S A L A V A A A A A T H H - - - R L S P S S - - - P L A T S N L N D S P L S D H A R Y S N L H H N
pt028573_POPTR_    I I K K S A S M G N L S A H Y H S S S S A A A - - - - - - - - - - - - - - - - - S P N P D S P V S D R V - - - - - - H D
gm040883_Glyma1    I I K K S A S M G N L N L S S S S S S A A A A H L Q F R S S P S S S N L P A A S S P N P S S P C S D P - - - - - - - - P
 
AT3G16350.1     E G Y L S D D P - A H G S G S S H R R G E R K R G V P W T E E E H R L F L V G L Q K L G K G D W R G I S R N Y V T S R T
pt028573_POPTR_    D G Y L S D D P A A H A S C S T S R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T
gm040883_Glyma1    Q G Y L S D D P - A H V S T F A N R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T
 
AT3G16350.1     P T Q V A S H A Q K Y F I R H T S S S R R K R R S S L F D M V T D E M V T D S S P T Q E E Q T L N G S S P S K E P E K K
pt028573_POPTR_    P T Q V A S H A Q K F F I R Q S N A T R R K R R S S L F D M V P E - M V Y P Q P - V P E E Q E - L P S S Q A G D D D N V
gm040883_Glyma1    P T Q V A S H A Q K Y F I R Q S H A T R R K R R S S L F D M V P D - M S S D Q P S V P E E Q V L L P P P E N S Q P C N G
 
AT3G16350.1     S Y L P S L E L S L N N T T E A E E V V A T A P R Q E K S Q E A I E P S N G - - - - - - - V S P M L V P G - - - - - - -
pt028573_POPTR_    D A L P S L N L S L K P E F E - - - - - - - - P M D T E S Q E L V K E R D K T V M G F S E F K P S - V P S S S E F V P I
gm040883_Glyma1    K S Q P S L N L S L K S E F E - - - - - - - - P M E T T S Q E N V Q Q T N E P M M G S N R L T P M - A P H - - - - - - -
 
AT3G16350.1     - - - - - - - - - - - G F F P P C F P V T Y T I W L P A S - L H G T E H A L N A E T S S Q Q H Q V L K P K P G F A K E R
pt028573_POPTR_    V S G S N E F T A V P G F F P A Y M P V P Y P Y W A P N T - - T P F E E G K G A A T S - - H H E V L K P V P S I L K E P
gm040883_Glyma1    - - - - - - - - - - - G C F P A Y L P V P F P V W - P S T W V H P F E E V K G G E T C - - H H Q I H K P I P V I P K E P
 
AT3G16350.1     V N M D E L V G M S Q L S I G M A T R H E T E T S P S P L S L R L - - E P S R P S A F H S N G S V N G A D L S K G - N S
pt028573_POPTR_    F N V D E L V G M S H L S L G E I E R R H R E - - P S P L S L K L I G E A P R Q S A F H A S A P A S G S D L S N G G T K
gm040883_Glyma1    V N V D E L V G M S H L S I G E A Q V R D R E - - P S P L S I K L L G E P S R Q S A F H A N V P V G S S D L N N G K D N
 
AT3G16350.1     A I Q A I
pt028573_POPTR_    R L N S -
gm040883_Glyma1    A I Q A V
 
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