Input
| Putative repression domain
|
|
AT3G16350.1 |
SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1 |
|
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1 |
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt028574 |
PLSGVKLFGVRLTDG in 36/367 |
AT3G16350.1 |
not_1st |
0.460750853 |
II |
VDALPSLNLSLKPEFE in 205/367 |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)
AT3G16350.1 MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSS--SAVKLFGVRLTDGS
pt028574_POPTR_ MTRRCSHCSNNGHNSRTCPTR--------------SSLASSSSSPLSGVKLFGVRLTDGS
********************* .. ..*.** *.************
AT3G16350.1 IIKKSASMGNLSALAVAAAAATHHRLSPSSPLATSNLNDSPLSDHARYSNLHHNEGYLSD
pt028574_POPTR_ IIKKSASMGNLSA----------HYHSSSSAAASPN-PDSPVSDRV------HDDGYLSD
************* * *.**. *:.* ***:**:. *::*****
AT3G16350.1 DP-AHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVAS
pt028574_POPTR_ DPAAHASCSTSRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVAS
** **.* *: ***:**:*************:*************:**:*.*********
AT3G16350.1 HAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSYLPSL
pt028574_POPTR_ HAQKFFIRQSNATRRKRRSSLFDMVP-EMVY-PQPVPEEQELP-SSQAGDDDNVDALPSL
****:***::.::************. *** ..*. *** * ** : : :: . ****
AT3G16350.1 ELSLNNT-----TEAEEVVATAPRQEKSQEAIEPSNGVSPMLVP-----------GGFFP
pt028574_POPTR_ NLSLKPEFEPMDTESQELVKERDKTVMGFSEFKPSVPSSSEFVPIVSGSNEFTAVPGFFP
:***: **::*:* : . . ::** *. :** ****
AT3G16350.1 PCFPVTYTIWLPASLHGTEHALNAETSSQQHQVLKPKPGFAKERVNMDELVGMSQLSIGM
pt028574_POPTR_ AYMPVPYPYWAPNTT-PFEEGKGAATS--HHEVLKPVPSILKEPFNVDELVGMSHLSLGE
. :**.*. * * : *.. .* ** :*:**** *.: ** .*:*******:**:*
AT3G16350.1 ATRHETETSPSPLSLRL--EPSRPSAFHSNGSVNGADLSKGNSAIQAI
pt028574_POPTR_ IERRHRE--PSPLSLKLIGEAPRQSAFHASAPASGSDLS-GTKRLNS-
*:. * ******:* *..* ****:.....*:*** *.. :::
BoxShade v3.31 C (beta, 970507) Output
AT3G16350.1 |
M |
T |
R |
R |
C |
S |
H |
C |
S |
N |
N |
G |
H |
N |
S |
R |
T |
C |
P |
T |
R |
G |
G |
G |
T |
C |
G |
G |
S |
G |
G |
G |
G |
G |
G |
G |
G |
G |
G |
G |
S |
G |
S |
S |
- |
- |
S |
A |
V |
K |
L |
F |
G |
V |
R |
L |
T |
D |
G |
S |
pt028574_POPTR_ |
M |
T |
R |
R |
C |
S |
H |
C |
S |
N |
N |
G |
H |
N |
S |
R |
T |
C |
P |
T |
R |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
S |
S |
L |
A |
S |
S |
S |
S |
S |
P |
L |
S |
G |
V |
K |
L |
F |
G |
V |
R |
L |
T |
D |
G |
S |
|
AT3G16350.1 |
I |
I |
K |
K |
S |
A |
S |
M |
G |
N |
L |
S |
A |
L |
A |
V |
A |
A |
A |
A |
A |
T |
H |
H |
R |
L |
S |
P |
S |
S |
P |
L |
A |
T |
S |
N |
L |
N |
D |
S |
P |
L |
S |
D |
H |
A |
R |
Y |
S |
N |
L |
H |
H |
N |
E |
G |
Y |
L |
S |
D |
pt028574_POPTR_ |
I |
I |
K |
K |
S |
A |
S |
M |
G |
N |
L |
S |
A |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
H |
Y |
H |
S |
S |
S |
S |
A |
A |
A |
S |
P |
N |
- |
P |
D |
S |
P |
V |
S |
D |
R |
V |
- |
- |
- |
- |
- |
- |
H |
D |
D |
G |
Y |
L |
S |
D |
|
AT3G16350.1 |
D |
P |
- |
A |
H |
G |
S |
G |
S |
S |
H |
R |
R |
G |
E |
R |
K |
R |
G |
V |
P |
W |
T |
E |
E |
E |
H |
R |
L |
F |
L |
V |
G |
L |
Q |
K |
L |
G |
K |
G |
D |
W |
R |
G |
I |
S |
R |
N |
Y |
V |
T |
S |
R |
T |
P |
T |
Q |
V |
A |
S |
pt028574_POPTR_ |
D |
P |
A |
A |
H |
A |
S |
C |
S |
T |
S |
R |
R |
G |
D |
R |
K |
K |
G |
V |
P |
W |
T |
E |
E |
E |
H |
R |
L |
F |
L |
I |
G |
L |
Q |
K |
L |
G |
K |
G |
D |
W |
R |
G |
I |
A |
R |
N |
F |
V |
V |
S |
R |
T |
P |
T |
Q |
V |
A |
S |
|
AT3G16350.1 |
H |
A |
Q |
K |
Y |
F |
I |
R |
H |
T |
S |
S |
S |
R |
R |
K |
R |
R |
S |
S |
L |
F |
D |
M |
V |
T |
D |
E |
M |
V |
T |
D |
S |
S |
P |
T |
Q |
E |
E |
Q |
T |
L |
N |
G |
S |
S |
P |
S |
K |
E |
P |
E |
K |
K |
S |
Y |
L |
P |
S |
L |
pt028574_POPTR_ |
H |
A |
Q |
K |
F |
F |
I |
R |
Q |
S |
N |
A |
T |
R |
R |
K |
R |
R |
S |
S |
L |
F |
D |
M |
V |
P |
- |
E |
M |
V |
Y |
- |
P |
Q |
P |
V |
P |
E |
E |
Q |
E |
L |
P |
- |
S |
S |
Q |
A |
G |
D |
D |
D |
N |
V |
D |
A |
L |
P |
S |
L |
|
AT3G16350.1 |
E |
L |
S |
L |
N |
N |
T |
- |
- |
- |
- |
- |
T |
E |
A |
E |
E |
V |
V |
A |
T |
A |
P |
R |
Q |
E |
K |
S |
Q |
E |
A |
I |
E |
P |
S |
N |
G |
V |
S |
P |
M |
L |
V |
P |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
G |
G |
F |
F |
P |
pt028574_POPTR_ |
N |
L |
S |
L |
K |
P |
E |
F |
E |
P |
M |
D |
T |
E |
S |
Q |
E |
L |
V |
K |
E |
R |
D |
K |
T |
V |
M |
G |
F |
S |
E |
F |
K |
P |
S |
V |
P |
S |
S |
S |
E |
F |
V |
P |
I |
V |
S |
G |
S |
N |
E |
F |
T |
A |
V |
P |
G |
F |
F |
P |
|
AT3G16350.1 |
P |
C |
F |
P |
V |
T |
Y |
T |
I |
W |
L |
P |
A |
S |
L |
H |
G |
T |
E |
H |
A |
L |
N |
A |
E |
T |
S |
S |
Q |
Q |
H |
Q |
V |
L |
K |
P |
K |
P |
G |
F |
A |
K |
E |
R |
V |
N |
M |
D |
E |
L |
V |
G |
M |
S |
Q |
L |
S |
I |
G |
M |
pt028574_POPTR_ |
A |
Y |
M |
P |
V |
P |
Y |
P |
Y |
W |
A |
P |
N |
T |
T |
- |
P |
F |
E |
E |
G |
K |
G |
A |
A |
T |
S |
- |
- |
H |
H |
E |
V |
L |
K |
P |
V |
P |
S |
I |
L |
K |
E |
P |
F |
N |
V |
D |
E |
L |
V |
G |
M |
S |
H |
L |
S |
L |
G |
E |
|
AT3G16350.1 |
A |
T |
R |
H |
E |
T |
E |
T |
S |
P |
S |
P |
L |
S |
L |
R |
L |
- |
- |
E |
P |
S |
R |
P |
S |
A |
F |
H |
S |
N |
G |
S |
V |
N |
G |
A |
D |
L |
S |
K |
G |
N |
S |
A |
I |
Q |
A |
I |
pt028574_POPTR_ |
I |
E |
R |
R |
H |
R |
E |
- |
- |
P |
S |
P |
L |
S |
L |
K |
L |
I |
G |
E |
A |
P |
R |
Q |
S |
A |
F |
H |
A |
S |
A |
P |
A |
S |
G |
S |
D |
L |
S |
- |
G |
T |
K |
R |
L |
N |
S |
- |
|
|