fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16350.1 SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt028573 PLSGVKLFGVRLTDG in 36/369 AT3G16350.1 1st_1st 0.465870307 Ia
VDALPSLNLSLKPEFE in 205/369
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G16350.1     MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSS--SAVKLFGVRLTDGS
pt028573_POPTR_ MTRRCSHCSNNGHNSRTCPTR--------------SSLASSSSSPLSGVKLFGVRLTDGS
                *********************              .. ..*.**  *.************

AT3G16350.1     IIKKSASMGNLSALAVAAAAATHHRLSPSSPLATSNLNDSPLSDHARYSNLHHNEGYLSD
pt028573_POPTR_ IIKKSASMGNLSA----------HYHSSSSAAASPN-PDSPVSDRV------HDDGYLSD
                *************          *  *.**. *:.*  ***:**:.      *::*****

AT3G16350.1     DP-AHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVAS
pt028573_POPTR_ DPAAHASCSTSRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVAS
                ** **.* *: ***:**:*************:*************:**:*.*********

AT3G16350.1     HAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSYLPSL
pt028573_POPTR_ HAQKFFIRQSNATRRKRRSSLFDMVP-EMVY-PQPVPEEQELP-SSQAGDDDNVDALPSL
                ****:***::.::************. ***  ..*. *** *  ** : : :: . ****

AT3G16350.1     ELSLNNT-----TEAEEVVATAPRQEKSQEAIEPSNGVSPMLVP-----------GGFFP
pt028573_POPTR_ NLSLKPEFEPMDTESQELVKERDKTVMGFSEFKPSVPSSSEFVPIVSGSNEFTAVPGFFP
                :***:       **::*:*    :   . . ::**   *. :**            ****

AT3G16350.1     PCFPVTYTIWLPASLHGTEHALNAETSSQQHQVLKPKPGFAKERVNMDELVGMSQLSIGM
pt028573_POPTR_ AYMPVPYPYWAPNTT-PFEEGKGAATS--HHEVLKPVPSILKEPFNVDELVGMSHLSLGE
                . :**.*. * * :    *.. .* **  :*:**** *.: ** .*:*******:**:* 

AT3G16350.1     ATRHETETSPSPLSLRL--EPSRPSAFHSNGSVNGADLSKG-----NSAIQAI
pt028573_POPTR_ IERRHRE--PSPLSLKLIGEAPRQSAFHASAPASGSDLSNGGTKRLNS-----
                  *:. *  ******:*  *..* ****:.....*:***:*     **
BoxShade v3.31 C (beta, 970507) Output
AT3G16350.1     M T R R C S H C S N N G H N S R T C P T R G G G T C G G S G G G G G G G G G G G S G S S - - S A V K L F G V R L T D G S
pt028573_POPTR_    M T R R C S H C S N N G H N S R T C P T R - - - - - - - - - - - - - - S S L A S S S S S P L S G V K L F G V R L T D G S
 
AT3G16350.1     I I K K S A S M G N L S A L A V A A A A A T H H R L S P S S P L A T S N L N D S P L S D H A R Y S N L H H N E G Y L S D
pt028573_POPTR_    I I K K S A S M G N L S A - - - - - - - - - - H Y H S S S S A A A S P N - P D S P V S D R V - - - - - - H D D G Y L S D
 
AT3G16350.1     D P - A H G S G S S H R R G E R K R G V P W T E E E H R L F L V G L Q K L G K G D W R G I S R N Y V T S R T P T Q V A S
pt028573_POPTR_    D P A A H A S C S T S R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T Q V A S
 
AT3G16350.1     H A Q K Y F I R H T S S S R R K R R S S L F D M V T D E M V T D S S P T Q E E Q T L N G S S P S K E P E K K S Y L P S L
pt028573_POPTR_    H A Q K F F I R Q S N A T R R K R R S S L F D M V P - E M V Y - P Q P V P E E Q E L P - S S Q A G D D D N V D A L P S L
 
AT3G16350.1     E L S L N N T - - - - - T E A E E V V A T A P R Q E K S Q E A I E P S N G V S P M L V P - - - - - - - - - - - G G F F P
pt028573_POPTR_    N L S L K P E F E P M D T E S Q E L V K E R D K T V M G F S E F K P S V P S S S E F V P I V S G S N E F T A V P G F F P
 
AT3G16350.1     P C F P V T Y T I W L P A S L H G T E H A L N A E T S S Q Q H Q V L K P K P G F A K E R V N M D E L V G M S Q L S I G M
pt028573_POPTR_    A Y M P V P Y P Y W A P N T T - P F E E G K G A A T S - - H H E V L K P V P S I L K E P F N V D E L V G M S H L S L G E
 
AT3G16350.1     A T R H E T E T S P S P L S L R L - - E P S R P S A F H S N G S V N G A D L S K G - - - - - N S A I Q A I
pt028573_POPTR_    I E R R H R E - - P S P L S L K L I G E A P R Q S A F H A S A P A S G S D L S N G G T K R L N S - - - - -
 
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