fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16350.1 SSSAVKLFGVRLTDG at 47/387 in AT3G16350.1
KSYLPSLELSLNNTTE at 235/387 in AT3G16350.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm040883 GGGGVKLFGVRLTDG in 27/360 AT3G16350.1 1st_1st 0.481228668 Ia
GKSQPSLNLSLKSEFE in 212/360
Gm038242 GGGGVKLFGVRLTDG in 27/356 AT3G16350.1 not_1st 0.474402730 II
GKSQPSLNLSLKSEFE in 208/356
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G16350.1     MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSSSAVKLFGVRLTDGSII
gm040883_Glyma1 MTRRCSHCTNNGHNSRTCPSRGGG---------------------GVKLFGVRLTDGSII
gm038242_Glyma1 MTRRCSHCSNNGHNSRTCPSRGGG---------------------GVKLFGVRLTDGSII
                ********:**********:****                     .**************

AT3G16350.1     KKSASMGNLSALA-VAAAAATHHRL--SPSS---PLATSNLN-DSPLSDHARYSNLHHNE
gm040883_Glyma1 KKSASMGNLNLSSSSSSAAAAHLQFRSSPSSSNLPAA-SSPNPSSPCSDPP--------Q
gm038242_Glyma1 KKSASMGNLNLSS-----AAAHHQFHSSPSSSNLAAAPSSPNPSSPCSDPP--------Q
                *********.  :     **:* ::  ****   . * *. * .** ** .        :

AT3G16350.1     GYLSDDPAHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPT
gm040883_Glyma1 GYLSDDPAHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPT
gm038242_Glyma1 GYLSDDPAHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPT
                ********* *  ::***:**:*************:*************:**:*.*****

AT3G16350.1     QVASHAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSY
gm040883_Glyma1 QVASHAQKYFIRQSHATRRKRRSSLFDMVPD-MSSDQPSVPEEQVLLPPPENSQPCNGKS
gm038242_Glyma1 QVASHAQKYFIRQSHATRRKRRSSLFDMVPD-MSSDQPSVPEEQVLLPPSQNSQPCNGKS
                ************:: ::************.* * :*.... ***.*  .. ..:* : . 

AT3G16350.1     LPSLELSLNNTTEAEEVVATAPRQEKSQEAIEP---SNGVSPMLVPGGFFPPCFPVTYTI
gm040883_Glyma1 QPSLNLSLKSEFEPMETTS----QENVQQTNEPMMGSNRLTPM-APHGCFPAYLPVPFPV
gm038242_Glyma1 QPSLNLSLKSEFEPMETTS----QENAQQTNETMMGSIGLTPM-APHGFFPAYLPVPFPM
                 ***:***:.  *. *..:    **: *:: *.   *  ::** .* * **. :**.:.:

AT3G16350.1     WLPASLHGTEHALNAETSSQQHQVLKPKPGFAKERVNMDELVGMSQLSIGMATRHETETS
gm040883_Glyma1 WPSTWVHPFEEVKGGETC--HHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAQVRDRE--
gm038242_Glyma1 WPSTVAPPFEEVKGGETS--HHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAKVRDRE--
                * .:     *.. ..**.  :**: ** * :.** **:*******:**** *  :: *  

AT3G16350.1     PSPLSLRL--EPSRPSAFHSNGSVNGADLSKG-NSAIQAI
gm040883_Glyma1 PSPLSIKLLGEPSRQSAFHANVPVGSSDLNNGKDNAIQAV
gm038242_Glyma1 PSPLSLKLLGEPSRQSAFHANAPVGTSDLNNGKDNAIQAV
                *****::*  **** ****:* .*. :**.:* :.****:
BoxShade v3.31 C (beta, 970507) Output
AT3G16350.1     M T R R C S H C S N N G H N S R T C P T R G G G T C G G S G G G G G G G G G G G S G S S S A V K L F G V R L T D G S I I
gm040883_Glyma1    M T R R C S H C T N N G H N S R T C P S R G G G - - - - - - - - - - - - - - - - - - - - - G V K L F G V R L T D G S I I
gm038242_Glyma1    M T R R C S H C S N N G H N S R T C P S R G G G - - - - - - - - - - - - - - - - - - - - - G V K L F G V R L T D G S I I
 
AT3G16350.1     K K S A S M G N L S A L A - V A A A A A T H H R L - - S P S S - - - P L A T S N L N - D S P L S D H A R Y S N L H H N E
gm040883_Glyma1    K K S A S M G N L N L S S S S S S A A A A H L Q F R S S P S S S N L P A A - S S P N P S S P C S D P P - - - - - - - - Q
gm038242_Glyma1    K K S A S M G N L N L S S - - - - - A A A H H Q F H S S P S S S N L A A A P S S P N P S S P C S D P P - - - - - - - - Q
 
AT3G16350.1     G Y L S D D P A H G S G S S H R R G E R K R G V P W T E E E H R L F L V G L Q K L G K G D W R G I S R N Y V T S R T P T
gm040883_Glyma1    G Y L S D D P A H V S T F A N R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T
gm038242_Glyma1    G Y L S D D P A H V S T F A N R R G D R K K G V P W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T
 
AT3G16350.1     Q V A S H A Q K Y F I R H T S S S R R K R R S S L F D M V T D E M V T D S S P T Q E E Q T L N G S S P S K E P E K K S Y
gm040883_Glyma1    Q V A S H A Q K Y F I R Q S H A T R R K R R S S L F D M V P D - M S S D Q P S V P E E Q V L L P P P E N S Q P C N G K S
gm038242_Glyma1    Q V A S H A Q K Y F I R Q S H A T R R K R R S S L F D M V P D - M S S D Q P S V P E E Q V L L P P S Q N S Q P C N G K S
 
AT3G16350.1     L P S L E L S L N N T T E A E E V V A T A P R Q E K S Q E A I E P - - - S N G V S P M L V P G G F F P P C F P V T Y T I
gm040883_Glyma1    Q P S L N L S L K S E F E P M E T T S - - - - Q E N V Q Q T N E P M M G S N R L T P M - A P H G C F P A Y L P V P F P V
gm038242_Glyma1    Q P S L N L S L K S E F E P M E T T S - - - - Q E N A Q Q T N E T M M G S I G L T P M - A P H G F F P A Y L P V P F P M
 
AT3G16350.1     W L P A S L H G T E H A L N A E T S S Q Q H Q V L K P K P G F A K E R V N M D E L V G M S Q L S I G M A T R H E T E T S
gm040883_Glyma1    W P S T W V H P F E E V K G G E T C - - H H Q I H K P I P V I P K E P V N V D E L V G M S H L S I G E A Q V R D R E - -
gm038242_Glyma1    W P S T V A P P F E E V K G G E T S - - H H Q I H K P I P V I P K E P V N V D E L V G M S H L S I G E A K V R D R E - -
 
AT3G16350.1     P S P L S L R L - - E P S R P S A F H S N G S V N G A D L S K G - N S A I Q A I
gm040883_Glyma1    P S P L S I K L L G E P S R Q S A F H A N V P V G S S D L N N G K D N A I Q A V
gm038242_Glyma1    P S P L S L K L L G E P S R Q S A F H A N A P V G T S D L N N G K D N A I Q A V
 
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