fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16500.1 TDQEKKLELRLGPPGG at 36/269 in AT3G16500.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm040892 SSEERKLELRLGPPGE in 38/320 AT3G16500.1 1st_1st 0.465454545 Ia
Pt030850 SSEEKKLELRLGPPGE in 39/336 AT3G16500.1 1st_1st 0.412727272 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G16500.1     MEGCPRNREIGPKLLDLIPQGRKWY--QEDKNNTDQEKKLELRLGPPGGDEEDHSA-IKK
gm040892_Glyma1 MDERSRN-EASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPG---EDWSLGGKM
pt030850_POPTR_ MEGCSKNVEACPRLLDLIPKEREWLGKREDERSSSEEKKLELRLGPPG---EDWSL----
                *:  .:* *  *:*****.: *:*   :.:: .:.:*:**********   ** *     

AT3G16500.1     KNT---EIRNIKKETEDKSFHCFNGNH---------------------------------
gm040892_Glyma1 KNT---E----REESLL-SLGCFSPNN------------------------------GFQ
pt030850_POPTR_ KNTSNRE----RHESQLNSFGYFTNGNQQTHKFPSSAENSHVWFNQQQQGQVAPPFLKFP
                ***   *    :.*:   *:  *. .:                                 

AT3G16500.1     -------------------------------------------FS-PSNKTTSV--PHIS
gm040892_Glyma1 SKASPWPNYHHHHQGNNNKASSSSFLQCPKVVVELQNGGDGKVFS-PSSANTAVSQPNTS
pt030850_POPTR_ SSSTP-PAATASQQSLPIMAKESSQPCCTKAVVELQQCAEKKAFSPPAPANTAV--PNSS
                                                           ** *:  .*:*  *: *

AT3G16500.1     QKRTAPGPVVGWPPVRSFRKNLASTS-SSKLGNESSHGGQINKSDDGEKQVETK--KEGM
gm040892_Glyma1 QKRTAPAPVVGWPPIRSFRKNLASSS-SASKPPPESQAEQHNKV-AGKKPVDNYANNKGL
pt030850_POPTR_ QKRTAPGPVVGWPPIRSFRKNLASSSGSYSKPTVESQ----------NKPVETC--KKGL
                ******.*******:*********:* * .    .*:          :* *:.   ::*:

AT3G16500.1     FVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRD-----ISDGQGEEKPII
gm040892_Glyma1 FVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAIT
pt030850_POPTR_ FVKINMEGVPIGRKVDLKAYDTYEKLSIAVDELFRGLLAAQRDSSSNGIMDKQEEAKAIT
                ******:**********:**::**:** .**:***********     : : * * *.* 

AT3G16500.1     GLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISSALTFGCSKQEKM
gm040892_Glyma1 GLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEL-SAFTLGS-KQDKI
pt030850_POPTR_ GVLDGSGEYTLVYEDNEGDMMLVGDVPWHMFVSTVKRLRVLKSSEV-SALSLGSIKQEKV
                *:***.**:**.******* ********:****:******:****: **:::*. **:*:

AT3G16500.1     MH-----
gm040892_Glyma1 PLDSAMK
pt030850_POPTR_ AVN----
BoxShade v3.31 C (beta, 970507) Output
AT3G16500.1     M E G C P R N R E I G P K L L D L I P Q G R K W Y - - Q E D K N N T D Q E K K L E L R L G P P G G D E E D H S A - I K K
gm040892_Glyma1    M D E R S R N - E A S P Q L L D L I S N E R E W Q M N K R N E G K S S E E R K L E L R L G P P G - - - E D W S L G G K M
pt030850_POPTR_    M E G C S K N V E A C P R L L D L I P K E R E W L G K R E D E R S S S E E K K L E L R L G P P G - - - E D W S L - - - -
 
AT3G16500.1     K N T - - - E I R N I K K E T E D K S F H C F N G N H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm040892_Glyma1    K N T - - - E - - - - R E E S L L - S L G C F S P N N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G F Q
pt030850_POPTR_    K N T S N R E - - - - R H E S Q L N S F G Y F T N G N Q Q T H K F P S S A E N S H V W F N Q Q Q Q G Q V A P P F L K F P
 
AT3G16500.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - F S - P S N K T T S V - - P H I S
gm040892_Glyma1    S K A S P W P N Y H H H H Q G N N N K A S S S S F L Q C P K V V V E L Q N G G D G K V F S - P S S A N T A V S Q P N T S
pt030850_POPTR_    S S S T P - P A A T A S Q Q S L P I M A K E S S Q P C C T K A V V E L Q Q C A E K K A F S P P A P A N T A V - - P N S S
 
AT3G16500.1     Q K R T A P G P V V G W P P V R S F R K N L A S T S - S S K L G N E S S H G G Q I N K S D D G E K Q V E T K - - K E G M
gm040892_Glyma1    Q K R T A P A P V V G W P P I R S F R K N L A S S S - S A S K P P P E S Q A E Q H N K V - A G K K P V D N Y A N N K G L
pt030850_POPTR_    Q K R T A P G P V V G W P P I R S F R K N L A S S S G S Y S K P T V E S Q - - - - - - - - - - N K P V E T C - - K K G L
 
AT3G16500.1     F V K I N M D G V P I G R K V D L N A Y N S Y E Q L S F V V D K L F R G L L A A Q R D - - - - - I S D G Q G E E K P I I
gm040892_Glyma1    F V K I N M D G V P I G R K V D L N A Y D S Y E N L S S A V D E L F R G L L A A Q R D S S A G G V H N K Q E E E K A I T
pt030850_POPTR_    F V K I N M E G V P I G R K V D L K A Y D T Y E K L S I A V D E L F R G L L A A Q R D S S S N G I M D K Q E E A K A I T
 
AT3G16500.1     G L L D G K G E F T L T Y E D N E G D K M L V G D V P W Q M F V S S V K R L R V I K S S E I S S A L T F G C S K Q E K M
gm040892_Glyma1    G L L D G S G E Y T L V Y E D N E G D R M L V G D V P W H M F V S T V K R L R V L K S S E L - S A F T L G S - K Q D K I
pt030850_POPTR_    G V L D G S G E Y T L V Y E D N E G D M M L V G D V P W H M F V S T V K R L R V L K S S E V - S A L S L G S I K Q E K V
 
AT3G16500.1     M H - - - - -
gm040892_Glyma1    P L D S A M K
pt030850_POPTR_    A V N - - - -
 
0