fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G16500.1 TDQEKKLELRLGPPGG at 36/269 in AT3G16500.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm040892 SSEERKLELRLGPPGE in 38/320 AT3G16500.1 1st_1st 0.465454545 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G16500.1     MEGCPRNREIGPKLLDLIPQGRKWYQEDKN--NTDQEKKLELRLGPPGGDEEDHS-AIKK
gm040892_Glyma1 MDERSRN-EASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPG---EDWSLGGKM
                *:  .** * .*:*****.: *:*  :.:*  ::.:*:**********   ** * . * 

AT3G16500.1     KNTEIRNIKKETEDKSFHCFNGNH------------------------------------
gm040892_Glyma1 KNTE-----REESLLSLGCFSPNNGFQSKASPWPNYHHHHQGNNNKASSSSFLQCPKVVV
                ****     :* .  *: **. *:                                    

AT3G16500.1     ----------FSPSNKTTSV--PHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNES
gm040892_Glyma1 ELQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSSASKPPPE
                          ****. .*:*  *: *******.*******:*********:**:.    .

AT3G16500.1     SHGGQINKSDDGEKQVE--TKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFR
gm040892_Glyma1 SQAEQHNKV-AGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFR
                *:. * **   *:* *:  ::::*:********************:***:** .**:***

AT3G16500.1     GLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSV
gm040892_Glyma1 GLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTV
                ******** * *     * ***.* *****.**:**.*******:********:****:*

AT3G16500.1     KRLRVIKSSEISSALTFGCSKQEKM-----MH
gm040892_Glyma1 KRLRVLKSSEL-SAFTLG-SKQDKIPLDSAMK
                *****:****: **:*:* ***:*:     *:
BoxShade v3.31 C (beta, 970507) Output
AT3G16500.1     M E G C P R N R E I G P K L L D L I P Q G R K W Y Q E D K N - - N T D Q E K K L E L R L G P P G G D E E D H S - A I K K
gm040892_Glyma1    M D E R S R N - E A S P Q L L D L I S N E R E W Q M N K R N E G K S S E E R K L E L R L G P P G - - - E D W S L G G K M
 
AT3G16500.1     K N T E I R N I K K E T E D K S F H C F N G N H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm040892_Glyma1    K N T E - - - - - R E E S L L S L G C F S P N N G F Q S K A S P W P N Y H H H H Q G N N N K A S S S S F L Q C P K V V V
 
AT3G16500.1     - - - - - - - - - - F S P S N K T T S V - - P H I S Q K R T A P G P V V G W P P V R S F R K N L A S T S S S K L G N E S
gm040892_Glyma1    E L Q N G G D G K V F S P S S A N T A V S Q P N T S Q K R T A P A P V V G W P P I R S F R K N L A S S S S A S K P P P E
 
AT3G16500.1     S H G G Q I N K S D D G E K Q V E - - T K K E G M F V K I N M D G V P I G R K V D L N A Y N S Y E Q L S F V V D K L F R
gm040892_Glyma1    S Q A E Q H N K V - A G K K P V D N Y A N N K G L F V K I N M D G V P I G R K V D L N A Y D S Y E N L S S A V D E L F R
 
AT3G16500.1     G L L A A Q R D I S D G - - - - - Q G E E K P I I G L L D G K G E F T L T Y E D N E G D K M L V G D V P W Q M F V S S V
gm040892_Glyma1    G L L A A Q R D S S A G G V H N K Q E E E K A I T G L L D G S G E Y T L V Y E D N E G D R M L V G D V P W H M F V S T V
 
AT3G16500.1     K R L R V I K S S E I S S A L T F G C S K Q E K M - - - - - M H
gm040892_Glyma1    K R L R V L K S S E L - S A F T L G - S K Q D K I P L D S A M K
 
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