fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17100.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035124 not found in 229aa AT3G17100.2 1st_1st 0.570063694 Ia
Pt040987 not found in 231aa AT3G17100.2 not_1st 0.563694267 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G17100.2     --MESISPVSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVE-KSPSPSISLEKWRSEKQQQ
pt035124_POPTR_ -MEPSSSSAVAAAIVSTNANINTDRTRRKKKKKSVLQQHQSKQNQNSQSHAKWKTEAQQQ
pt040987_POPTR_ MMMASSTTTTSVAAVNTNANINTDRTRRKKKKKSLLQQHQSKQNQNSQSHAKWKTEAQQQ
                    * :..       *.:. *:**:***:****  .. : *. . * *  **::* ***

AT3G17100.2     IYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKA
pt035124_POPTR_ VYSSKLIQALSQVNLN--PSTSSA---PRQGRAVREVADRALAFAAKGKTRWSRAILTSR
pt040987_POPTR_ IYSSKLIQALSQVNLN--PSSSSA---PRQGRAVREVADRALAFAAKGKTRWSRAILTNR
                :**:**::** ::.:.  **:**:   ** *************.**:*** ******:. 

AT3G17100.2     VKLKFRK--HKRQRISNPTTT-------TLTTGSIRSKKQRATVLRLKAKGLPAVQRKVK
pt035124_POPTR_ IKLKFRKQQHKRQRLASSSSSSPGS---TTGSSSRSSRKHKVSVLRLKAKGLPAVQRKVR
pt040987_POPTR_ IKLKFRKQQHKRQRLASSSSS--GSTVVTTASNSRSSRKHKVSVLRLKGKGLPAVQRKVR
                :******  *****::..:::       *  :.*  *:*::.:*****.**********:

AT3G17100.2     VLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSSPPPPTPGHEGGQTHM
pt035124_POPTR_ VLGRLVPGCLKQPLPVILEEATDYIAALEMQVKTMTAIAELLSRSTSEASSTSEPMTS--
pt040987_POPTR_ VLGRLVPGCRKQPLPIILEEATDYIAALEMQVKAMSAIAELLSRSSSGAGSSLEPMSS--
                **.****** **.**::***:******:***:::*:** . :* *.. . .  *   :  

AT3G17100.2     LG
pt035124_POPTR_ --
pt040987_POPTR_ --
BoxShade v3.31 C (beta, 970507) Output
AT3G17100.2     - - M E S I S P V S N Q L L Q P T T T S S N S D R S R R K R K K K S S P S S V E - K S P S P S I S L E K W R S E K Q Q Q
pt035124_POPTR_    - M E P S S S S A V A A A I V S T N A N I N T D R T R R K K K K K S V L Q Q H Q S K Q N Q N S Q S H A K W K T E A Q Q Q
pt040987_POPTR_    M M M A S S T T T T S V A A V N T N A N I N T D R T R R K K K K K S L L Q Q H Q S K Q N Q N S Q S H A K W K T E A Q Q Q
 
AT3G17100.2     I Y S T K L V H A L R E L R I S Q Q P S S S S S S S I P R G G R A V R E V A D R A L A V A A R G K T L W S R A I L S K A
pt035124_POPTR_    V Y S S K L I Q A L S Q V N L N - - P S T S S A - - - P R Q G R A V R E V A D R A L A F A A K G K T R W S R A I L T S R
pt040987_POPTR_    I Y S S K L I Q A L S Q V N L N - - P S S S S A - - - P R Q G R A V R E V A D R A L A F A A K G K T R W S R A I L T N R
 
AT3G17100.2     V K L K F R K - - H K R Q R I S N P T T T - - - - - - - T L T T G S I R S K K Q R A T V L R L K A K G L P A V Q R K V K
pt035124_POPTR_    I K L K F R K Q Q H K R Q R L A S S S S S S P G S - - - T T G S S S R S S R K H K V S V L R L K A K G L P A V Q R K V R
pt040987_POPTR_    I K L K F R K Q Q H K R Q R L A S S S S S - - G S T V V T T A S N S R S S R K H K V S V L R L K G K G L P A V Q R K V R
 
AT3G17100.2     V L S R L V P G C R K Q S L P V V L E E T T D Y I A A M E M Q I R T M T A I L S A V S S S P P P P T P G H E G G Q T H M
pt035124_POPTR_    V L G R L V P G C L K Q P L P V I L E E A T D Y I A A L E M Q V K T M T A I A E L L S R S T S E A S S T S E P M T S - -
pt040987_POPTR_    V L G R L V P G C R K Q P L P I I L E E A T D Y I A A L E M Q V K A M S A I A E L L S R S S S G A G S S L E P M S S - -
 
AT3G17100.2     L G
pt035124_POPTR_    - -
pt040987_POPTR_    - -
 
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