fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17600.1 SESSVNLSLSLTFPST at 27/158 in AT3G17600.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb007705 DDLSTDLQLGLSLSPA in 43/193 AT3G17600.1 1st_1st 0.576923076 Ia
Gm035692 TDLSTDLRLGLSISPS in 103/244 AT3G17600.1 1st_1st 0.625 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G17600.1     -MEV--------------------------SN----------------------------
Sb007705_Sorbi1 MAEC--------------------------KD----------------------------
gm035692_Glyma1 MSDLALLLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQFHSLEDMGTLEQIDAP
                  :                           .:                            

AT3G17600.1     --SCSSFSSSSVDS-TKPSPSES--------------------SVNLSLSL---------
Sb007705_Sorbi1 --SSGRSPSSSMDSSTHPVLSTT-------SSGCRPAARRDDLSTDLQLGLSLSPASSSL
gm035692_Glyma1 QTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACR---NRTDLSTDLRLGLSISPSSQSE
                   ..  .***:** .:*  : :                    *.:* *.*         

AT3G17600.1     -------TFPSTSPQREARQDWPPIKSRLRDTLKGRR--LLRRGDDTSLFVKVYMEGVPI
Sb007705_Sorbi1 LVAESKRSIPST-PRNQVLPDWPPIKPFLRSALTASA---RRR---STLFVKVYMEGVPI
gm035692_Glyma1 L------PFNST-PREESF-DWPPIKSILRSTLVGKQSHLSQR---PSLFVKVYMEGIPI
                       .: ** *:.:   ******. **.:* .      :*   .:*********:**

AT3G17600.1     GRKLDLCVFSGYESLLENLSHMFDTSIICGN------R---DRKHHVLTYEDKDGDWMMV
Sb007705_Sorbi1 GRKLDLLLLDGYDSLLAKLRHMFKASITYADVMEYHQRAPHEKAAHVLTYEDQDGDWMMV
gm035692_Glyma1 GRKLNLMAHYSYDGLVKTLGHMFRTNILCPNSQPLNSR-----NFHVLTYEDQEGDWMMV
                ****:*    .*:.*: .* *** :.*   :      *       *******::******

AT3G17600.1     GDIPWDMFLETVRRLKITRPERY
Sb007705_Sorbi1 GDVPWELFLGSVRKLRIARTDKC
gm035692_Glyma1 GDVPWEMFLNSVKRLKITRADRC
                **:**::** :*::*:*:*.::
BoxShade v3.31 C (beta, 970507) Output
AT3G17600.1     - M E V - - - - - - - - - - - - - - - - - - - - - - - - - - S N - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sb007705_Sorbi1    M A E C - - - - - - - - - - - - - - - - - - - - - - - - - - K D - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm035692_Glyma1    M S D L A L L L L I I L S L S F F L F W Y K V A S V V Y I Y K D P K V A V F L F S L D Q F H S L E D M G T L E Q I D A P
 
AT3G17600.1     - - S C S S F S S S S V D S - T K P S P S E S - - - - - - - - - - - - - - - - - - - - S V N L S L S L - - - - - - - - -
Sb007705_Sorbi1    - - S S G R S P S S S M D S S T H P V L S T T - - - - - - - S S G C R P A A R R D D L S T D L Q L G L S L S P A S S S L
gm035692_Glyma1    Q T R S S S S S S S S I D S N N H P S R T R T P P P S S P S S S A C R - - - N R T D L S T D L R L G L S I S P S S Q S E
 
AT3G17600.1     - - - - - - - T F P S T S P Q R E A R Q D W P P I K S R L R D T L K G R R - - L L R R G D D T S L F V K V Y M E G V P I
Sb007705_Sorbi1    L V A E S K R S I P S T - P R N Q V L P D W P P I K P F L R S A L T A S A - - - R R R - - - S T L F V K V Y M E G V P I
gm035692_Glyma1    L - - - - - - P F N S T - P R E E S F - D W P P I K S I L R S T L V G K Q S H L S Q R - - - P S L F V K V Y M E G I P I
 
AT3G17600.1     G R K L D L C V F S G Y E S L L E N L S H M F D T S I I C G N - - - - - - R - - - D R K H H V L T Y E D K D G D W M M V
Sb007705_Sorbi1    G R K L D L L L L D G Y D S L L A K L R H M F K A S I T Y A D V M E Y H Q R A P H E K A A H V L T Y E D Q D G D W M M V
gm035692_Glyma1    G R K L N L M A H Y S Y D G L V K T L G H M F R T N I L C P N S Q P L N S R - - - - - N F H V L T Y E D Q E G D W M M V
 
AT3G17600.1     G D I P W D M F L E T V R R L K I T R P E R Y
Sb007705_Sorbi1    G D V P W E L F L G S V R K L R I A R T D K C
gm035692_Glyma1    G D V P W E M F L N S V K R L K I T R A D R C
 
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