fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17600.1 SESSVNLSLSLTFPST at 27/158 in AT3G17600.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm045965 TDLSTDLRLGLSISPS in 119/260 AT3G17600.1 not_1st 0.625 II
Gm045966 TDLSTDLRLGLSISPS in 119/243 AT3G17600.1 not_1st 0.524038461 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G17600.1     -----MEVSNS--------------------------------C----------------
gm045966_Glyma1 MSPTLMANQNQRECAECLTWLCFLLITLSLSFFLFCFKVASVVCIYKEPKVAAFLFSLDQ
gm045965_Glyma1 MSPTLMANQNQRECAECLTWLCFLLITLSLSFFLFCFKVASVVCIYKEPKVAAFLFSLDQ
                     *  .*.                                *                

AT3G17600.1     --------------------SSFSSSSVDS--------TKPSPSESS-------------
gm045966_Glyma1 FHSLEDMGTLEQIDAPQTQSSSSSSSSIDSNNNPSRTRTPPSSSPSSSLCRNRTDLSTDL
gm045965_Glyma1 FHSLEDMGTLEQIDAPQTQSSSSSSSSIDSNNNPSRTRTPPSSSPSSSLCRNRTDLSTDL
                                    ** ****:**        * **.* **             

AT3G17600.1     -VNLSLSLTFPSTSP----QREARQDWPPIKSRLRDTLKGRR--LLRRGDDTSLFVKVYM
gm045966_Glyma1 RLGLSISPSSQSESPFNSTRREESFDWPPIKSILRSTLVGKQSYLSQR---PSLFVKVYM
gm045965_Glyma1 RLGLSISPSSQSESPFNSTRREESFDWPPIKSILRSTLVGKQSYLSQR---PSLFVKVYM
                 :.**:* :  * **    :**   ******* **.** *::  * :*   .********

AT3G17600.1     EGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGN----RDRKHHVLTYEDKDGDWMMV
gm045966_Glyma1 EGIPIGRKLNLMAHYGYDGLVKTLGHMFRTNILCPNSQPLNSGNFHVLTYEDQEGDWMMV
gm045965_Glyma1 EGIPIGRKLNLMAHYGYDGLVKTLGHMFRTNILCPNSQPLNSGNFHVLTYEDQEGDWMMV
                **:******:* .. **:.*::.*.*** *.*:* *    .. :.*******::******

AT3G17600.1     GDIPWDMFLETVRRLKITRPERY
gm045966_Glyma1 GDVPWE-----------------
gm045965_Glyma1 GDVPWEMFLNSVKRLKITRADRC
                **:**:
BoxShade v3.31 C (beta, 970507) Output
AT3G17600.1     - - - - - M E V S N S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - C - - - - - - - - - - - - - - - -
gm045966_Glyma1    M S P T L M A N Q N Q R E C A E C L T W L C F L L I T L S L S F F L F C F K V A S V V C I Y K E P K V A A F L F S L D Q
gm045965_Glyma1    M S P T L M A N Q N Q R E C A E C L T W L C F L L I T L S L S F F L F C F K V A S V V C I Y K E P K V A A F L F S L D Q
 
AT3G17600.1     - - - - - - - - - - - - - - - - - - - - S S F S S S S V D S - - - - - - - - T K P S P S E S S - - - - - - - - - - - - -
gm045966_Glyma1    F H S L E D M G T L E Q I D A P Q T Q S S S S S S S S I D S N N N P S R T R T P P S S S P S S S L C R N R T D L S T D L
gm045965_Glyma1    F H S L E D M G T L E Q I D A P Q T Q S S S S S S S S I D S N N N P S R T R T P P S S S P S S S L C R N R T D L S T D L
 
AT3G17600.1     - V N L S L S L T F P S T S P - - - - Q R E A R Q D W P P I K S R L R D T L K G R R - - L L R R G D D T S L F V K V Y M
gm045966_Glyma1    R L G L S I S P S S Q S E S P F N S T R R E E S F D W P P I K S I L R S T L V G K Q S Y L S Q R - - - P S L F V K V Y M
gm045965_Glyma1    R L G L S I S P S S Q S E S P F N S T R R E E S F D W P P I K S I L R S T L V G K Q S Y L S Q R - - - P S L F V K V Y M
 
AT3G17600.1     E G V P I G R K L D L C V F S G Y E S L L E N L S H M F D T S I I C G N - - - - R D R K H H V L T Y E D K D G D W M M V
gm045966_Glyma1    E G I P I G R K L N L M A H Y G Y D G L V K T L G H M F R T N I L C P N S Q P L N S G N F H V L T Y E D Q E G D W M M V
gm045965_Glyma1    E G I P I G R K L N L M A H Y G Y D G L V K T L G H M F R T N I L C P N S Q P L N S G N F H V L T Y E D Q E G D W M M V
 
AT3G17600.1     G D I P W D M F L E T V R R L K I T R P E R Y
gm045966_Glyma1    G D V P W E - - - - - - - - - - - - - - - - -
gm045965_Glyma1    G D V P W E M F L N S V K R L K I T R A D R C
 
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