fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17600.1 SESSVNLSLSLTFPST at 27/158 in AT3G17600.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035692 TDLSTDLRLGLSISPS in 103/244 AT3G17600.1 1st_1st 0.625 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G17600.1     -----------MEVS---------------------------------------------
gm035692_Glyma1 MSDLALLLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQFHSLEDMGTLEQIDAP
                           :.:*                                             

AT3G17600.1     -NSCSSFSSSSVDS--------TKP--SPSES--------SVNLSLSLT--------FPS
gm035692_Glyma1 QTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPF
                 . .** ****:**        * *  ***.*        *.:* *.*:        :* 

AT3G17600.1     TSPQREARQDWPPIKSRLRDTLKGRR--LLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSG
gm035692_Glyma1 NSTPREESFDWPPIKSILRSTLVGKQSHLSQR---PSLFVKVYMEGIPIGRKLNLMAHYS
                .*. **   ******* **.** *::  * :*   .**********:******:* .. .

AT3G17600.1     YESLLENLSHMFDTSIICGN----RDRKHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLK
gm035692_Glyma1 YDGLVKTLGHMFRTNILCPNSQPLNSRNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLK
                *:.*::.*.*** *.*:* *    ..*:.*******::********:**:***::*:***

AT3G17600.1     ITRPERY
gm035692_Glyma1 ITRADRC
                ***.:*
BoxShade v3.31 C (beta, 970507) Output
AT3G17600.1     - - - - - - - - - - - M E V S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm035692_Glyma1    M S D L A L L L L I I L S L S F F L F W Y K V A S V V Y I Y K D P K V A V F L F S L D Q F H S L E D M G T L E Q I D A P
 
AT3G17600.1     - N S C S S F S S S S V D S - - - - - - - - T K P - - S P S E S - - - - - - - - S V N L S L S L T - - - - - - - - F P S
gm035692_Glyma1    Q T R S S S S S S S S I D S N N H P S R T R T P P P S S P S S S A C R N R T D L S T D L R L G L S I S P S S Q S E L P F
 
AT3G17600.1     T S P Q R E A R Q D W P P I K S R L R D T L K G R R - - L L R R G D D T S L F V K V Y M E G V P I G R K L D L C V F S G
gm035692_Glyma1    N S T P R E E S F D W P P I K S I L R S T L V G K Q S H L S Q R - - - P S L F V K V Y M E G I P I G R K L N L M A H Y S
 
AT3G17600.1     Y E S L L E N L S H M F D T S I I C G N - - - - R D R K H H V L T Y E D K D G D W M M V G D I P W D M F L E T V R R L K
gm035692_Glyma1    Y D G L V K T L G H M F R T N I L C P N S Q P L N S R N F H V L T Y E D Q E G D W M M V G D V P W E M F L N S V K R L K
 
AT3G17600.1     I T R P E R Y
gm035692_Glyma1    I T R A D R C
 
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