fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17609.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb003979 not found in 142aa AT5G11260.1 1st_not 0.409090909 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G17609.2     MSLQRPNGNSSSSSSHKKHKTEESDEELLMVPD--MEAAGSTCV---LSSSADDGVNNPE
Sb003979_Sorbi1 ---------------------MESDEEIRRVPEVGLELAGPSTSGRETTAAAGTAAGAAG
                                      *****:  **:  :* **.:      :::*. ... . 

AT3G17609.2     LDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQN
Sb003979_Sorbi1 TSSASQAATSAARRRGRSPADKEHRRLKRLLRNRVSAQQARERKKAYLSELEVRVKDLEK
                 ..:.:..::* *****.*.***:* *******************.*:*:** *.::*::

AT3G17609.2     NNDQLEEKISTLTNENTMLRKMLINT---------RPKTDDNH
Sb003979_Sorbi1 RNSELEERLSTLQNENQMLRQILKNTTVNRRGPGGSSAGGDSQ
                .*.:***::*** *** ***::* **          .  .*.:
BoxShade v3.31 C (beta, 970507) Output
AT3G17609.2     M S L Q R P N G N S S S S S S H K K H K T E E S D E E L L M V P D - - M E A A G S T C V - - - L S S S A D D G V N N P E
Sb003979_Sorbi1    - - - - - - - - - - - - - - - - - - - - - M E S D E E I R R V P E V G L E L A G P S T S G R E T T A A A G T A A G A A G
 
AT3G17609.2     L D Q T Q N G V S T A K R R R G R N P V D K E Y R S L K R L L R N R V S A Q Q A R E R K K V Y V S D L E S R A N E L Q N
Sb003979_Sorbi1    T S S A S Q A A T S A A R R R G R S P A D K E H R R L K R L L R N R V S A Q Q A R E R K K A Y L S E L E V R V K D L E K
 
AT3G17609.2     N N D Q L E E K I S T L T N E N T M L R K M L I N T - - - - - - - - - R P K T D D N H
Sb003979_Sorbi1    R N S E L E E R L S T L Q N E N Q M L R Q I L K N T T V N R R G P G G S S A G G D S Q
 
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