fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17609.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm044303 not found in 191aa AT3G17609.2 1st_1st 0.533057851 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G17609.2     MSLQRPN----------------GNSSSSSS--------------HKKHKTEESDEELLM
gm044303_Glyma1 MSLPRPSEGKAPSQLKEGVAPAAAAASSSSSWNNRLHTFPPLSLHNKSSKIEDSDEDMFT
                *** **.                . :*****              :*. * *:***::: 

AT3G17609.2     VPDMEA------AGSTCVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKR
gm044303_Glyma1 VPDVETTPVSVHSAATLQNSNLTQRNVTDP---QFQTGFP-GKRRRGRNPADKEHRRLKR
                ***:*:      :.:*   *. :: .*.:*   * *.*.. .********.***:* ***

AT3G17609.2     LLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINTRPK
gm044303_Glyma1 LLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPK
                *******************.******:***::*  ***:**** ********:*:*:***

AT3G17609.2     TDDNH----------
gm044303_Glyma1 TDDSIEQKQDQLSKS
                ***.
BoxShade v3.31 C (beta, 970507) Output
AT3G17609.2     M S L Q R P N - - - - - - - - - - - - - - - - G N S S S S S S - - - - - - - - - - - - - - H K K H K T E E S D E E L L M
gm044303_Glyma1    M S L P R P S E G K A P S Q L K E G V A P A A A A A S S S S S W N N R L H T F P P L S L H N K S S K I E D S D E D M F T
 
AT3G17609.2     V P D M E A - - - - - - A G S T C V L S S S A D D G V N N P E L D Q T Q N G V S T A K R R R G R N P V D K E Y R S L K R
gm044303_Glyma1    V P D V E T T P V S V H S A A T L Q N S N L T Q R N V T D P - - - Q F Q T G F P - G K R R R G R N P A D K E H R R L K R
 
AT3G17609.2     L L R N R V S A Q Q A R E R K K V Y V S D L E S R A N E L Q N N N D Q L E E K I S T L T N E N T M L R K M L I N T R P K
gm044303_Glyma1    L L R N R V S A Q Q A R E R K K V Y V N D L E S R A K E L Q D K N A I L E E R I S T L I N E N T M L R K V L M N A R P K
 
AT3G17609.2     T D D N H - - - - - - - - - -
gm044303_Glyma1    T D D S I E Q K Q D Q L S K S
 
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