fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17730.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026906 not found in 241aa AT3G17730.1 not_1st 0.775100401 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G17730.1     MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSR
pt026906_POPTR_ MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFFPSR
                *:***********************************************:******:***

AT3G17730.1     DPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSRAIGMKKTLVYYKGRAPQ
pt026906_POPTR_ DPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVNCQNRAIGMKKTLVYYRGRAPQ
                *************************.************..*.************:*****

AT3G17730.1     GIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTTAS
pt026906_POPTR_ GIRTDWVMHEYRLDDKECEDTSGIQDSYALCRVFKKNGICSEIEEQ-----GQCTSTSLS
                ****************:*:*.*.:******************:*.:     ***: *: *

AT3G17730.1     MEEINSNNNNNYNNDYETMSPEVGV-SSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAM
pt026906_POPTR_ LME---SSPQGVINEYETMSPDVPIASSSCVEE--EDKDDSWMQFITDEPWCSSNN--AM
                : *   .. :.  *:******:* : **:****  :************:.* :*.*  **

AT3G17730.1     GHGQGVY------
pt026906_POPTR_ VGGEEISHSTFTD
                  *: :
BoxShade v3.31 C (beta, 970507) Output
AT3G17730.1     M A P V G L P P G F R F H P T D E E L V N Y Y L K R K I N G Q E I E L D I I P E V D L Y K C E P W D L A E K S F L P S R
pt026906_POPTR_    M S P V G L P P G F R F H P T D E E L V N Y Y L K R K I N G Q E I E L D I I P E V D L Y K C E P W E L A E K S F F P S R
 
AT3G17730.1     D P E W Y F F G P R D R K Y P N G F R T N R A T R G G Y W K S T G K D R R V T S Q S R A I G M K K T L V Y Y K G R A P Q
pt026906_POPTR_    D P E W Y F F G P R D R K Y P N G F R T N R A T R A G Y W K S T G K D R R V N C Q N R A I G M K K T L V Y Y R G R A P Q
 
AT3G17730.1     G I R T D W V M H E Y R L D D K D C D D P S S L Q D S Y A L C R V F K K N G I C S E L E S E R Q L Q T G Q C S F T T A S
pt026906_POPTR_    G I R T D W V M H E Y R L D D K E C E D T S G I Q D S Y A L C R V F K K N G I C S E I E E Q - - - - - G Q C T S T S L S
 
AT3G17730.1     M E E I N S N N N N N Y N N D Y E T M S P E V G V - S S A C V E E V V D D K D D S W M Q F I T D D A W D T S S N G A A M
pt026906_POPTR_    L M E - - - S S P Q G V I N E Y E T M S P D V P I A S S S C V E E - - E D K D D S W M Q F I T D E P W C S S N N - - A M
 
AT3G17730.1     G H G Q G V Y - - - - - -
pt026906_POPTR_    V G G E E I S H S T F T D
 
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