fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G17730.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm045461 not found in 237aa AT3G17730.1 1st_1st 0.761044176 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G17730.1     MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSR
gm045461_Glyma1 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSR
                *:***********************************************:**********

AT3G17730.1     DPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSRAIGMKKTLVYYKGRAPQ
gm045461_Glyma1 DPEWYFFGPRDRKYPNGYRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQ
                *****************:*******.************:.***.**********:*****

AT3G17730.1     GIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTTAS
gm045461_Glyma1 GIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSDIEEQ-----GQCSISLIE
                ****************:*:*.:.***:**************::*.:     ****::  .

AT3G17730.1     MEEINSNNNNNYNNDYETMSPEV-GVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAM
gm045461_Glyma1 -------SSQTITNECETMSPDIPGASSSCLEE--EDKDDSWMQFITEDAW-YSSNAAMV
                       ..:. .*: *****:: *.**:*:**  :***********:***  ***.* :

AT3G17730.1     GHGQGVY------
gm045461_Glyma1 G-GEEVSHVTFTN
                * *: *
BoxShade v3.31 C (beta, 970507) Output
AT3G17730.1     M A P V G L P P G F R F H P T D E E L V N Y Y L K R K I N G Q E I E L D I I P E V D L Y K C E P W D L A E K S F L P S R
gm045461_Glyma1    M S P V G L P P G F R F H P T D E E L V N Y Y L K R K I N G Q E I E L D I I P E V D L Y K C E P W E L A E K S F L P S R
 
AT3G17730.1     D P E W Y F F G P R D R K Y P N G F R T N R A T R G G Y W K S T G K D R R V T S Q S R A I G M K K T L V Y Y K G R A P Q
gm045461_Glyma1    D P E W Y F F G P R D R K Y P N G Y R T N R A T R A G Y W K S T G K D R R V S C Q S R P I G M K K T L V Y Y R G R A P Q
 
AT3G17730.1     G I R T D W V M H E Y R L D D K D C D D P S S L Q D S Y A L C R V F K K N G I C S E L E S E R Q L Q T G Q C S F T T A S
gm045461_Glyma1    G I R T D W V M H E Y R L D D K E C E D T T G L Q D T Y A L C R V F K K N G I C S D I E E Q - - - - - G Q C S I S L I E
 
AT3G17730.1     M E E I N S N N N N N Y N N D Y E T M S P E V - G V S S A C V E E V V D D K D D S W M Q F I T D D A W D T S S N G A A M
gm045461_Glyma1    - - - - - - - S S Q T I T N E C E T M S P D I P G A S S S C L E E - - E D K D D S W M Q F I T E D A W - Y S S N A A M V
 
AT3G17730.1     G H G Q G V Y - - - - - -
gm045461_Glyma1    G - G E E V S H V T F T N
 
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