fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G20880.1 HDVTVDLHLGLPNLGD at 178/412 in AT3G20880.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt011936 ETVTVALHLGLPSPCS in 112/336 AT3G57670.1 1st_not 0.488431876 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G20880.1     MLFSTVLSHRTLYILTCPNTLIHSYTHPHIHAYLAFTGFLTQLHHLEISCLLLLFFSLSS
pt011936_POPTR_ ------------------------------------------------------------
                                                                            

AT3G20880.1     LLKLMADPDCIFRNGYVDY---YNYSFNYATSLSRIYNSHDSFYYPHQTT--NPNINENP
pt011936_POPTR_ ----MADPYSNYFNGWYNFKLHHNLSASASSSNPSLYASYGCNTYSDNNTIHNSSFIQFC
                    **** . : **: ::   :* * . ::* . :* *:..  *..:.*  *..: :  

AT3G20880.1     NLTSPDSPPLREALPLLSLSPI-HKHQEPTANHHEYYFMETTETSSNSNFLDQCQDSYRH
pt011936_POPTR_ QSSSPPSPPLREALPLLSLSPTRHEHQQESS-------CSAMEVDKNKEREESLCDG--E
                : :** ***************  *:**: ::        .: *...*.:  :.  *.  .

AT3G20880.1     DVTVDLHLGLPNLGDGGSSSSDVV--LDSTDHQEGHHDHHQDQGLEVTMASDHDDEHGGL
pt011936_POPTR_ TVTVALHLGLPS-----PCSADLVSRLSSSEISSDKED--------VTAAS-------GY
                 *** ******.     ..*:*:*  *.*:: ...:.*        ** **       * 

AT3G20880.1     QRGNHLH--HFWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR
pt011936_POPTR_ QTSSTLNKGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLR
                * .. *:  ::*********:***************************************

AT3G20880.1     GTQPTAMLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFA
pt011936_POPTR_ GTQPTAMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFA
                ********:**********:********:*****************::** **:******

AT3G20880.1     VKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCCGID--HEEEEAASDV
pt011936_POPTR_ VRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKSFGHGH-SANGIDFFEEDDEPASEI
                *:****************:**************:*:**:** .. ***  .*::*.**::

AT3G20880.1     EQQE------
pt011936_POPTR_ EQDNDSTQRN
                **::
BoxShade v3.31 C (beta, 970507) Output
AT3G20880.1     M L F S T V L S H R T L Y I L T C P N T L I H S Y T H P H I H A Y L A F T G F L T Q L H H L E I S C L L L L F F S L S S
pt011936_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT3G20880.1     L L K L M A D P D C I F R N G Y V D Y - - - Y N Y S F N Y A T S L S R I Y N S H D S F Y Y P H Q T T - - N P N I N E N P
pt011936_POPTR_    - - - - M A D P Y S N Y F N G W Y N F K L H H N L S A S A S S S N P S L Y A S Y G C N T Y S D N N T I H N S S F I Q F C
 
AT3G20880.1     N L T S P D S P P L R E A L P L L S L S P I - H K H Q E P T A N H H E Y Y F M E T T E T S S N S N F L D Q C Q D S Y R H
pt011936_POPTR_    Q S S S P P S P P L R E A L P L L S L S P T R H E H Q Q E S S - - - - - - - C S A M E V D K N K E R E E S L C D G - - E
 
AT3G20880.1     D V T V D L H L G L P N L G D G G S S S S D V V - - L D S T D H Q E G H H D H H Q D Q G L E V T M A S D H D D E H G G L
pt011936_POPTR_    T V T V A L H L G L P S - - - - - P C S A D L V S R L S S S E I S S D K E D - - - - - - - - V T A A S - - - - - - - G Y
 
AT3G20880.1     Q R G N H L H - - H F W I P T P S Q I L M G P T Q F S C P L C F K T F N R Y N N M Q M H M W G H G S Q Y R K G P E S L R
pt011936_POPTR_    Q T S S T L N K G Q Y W I P T P S Q I L I G P T Q F S C P L C F K T F N R Y N N M Q M H M W G H G S Q Y R K G P E S L R
 
AT3G20880.1     G T Q P T A M L K L P C Y C C A P G C K N N I D H P R A R P L K D F R T L Q T H Y K R K H G V R P F A C R R C G K A F A
pt011936_POPTR_    G T Q P T A M L R L P C Y C C A P G C R N N I D H P R A K P L K D F R T L Q T H Y K R K H G I K P F M C R K C G K A F A
 
AT3G20880.1     V K G D W R T H E K N C G K L W Y C S C G S D F K H K R S L K D H V K A F G N G H V P C C G I D - - H E E E E A A S D V
pt011936_POPTR_    V R G D W R T H E K N C G K L W Y C T C G S D F K H K R S L K D H I K S F G H G H - S A N G I D F F E E D D E P A S E I
 
AT3G20880.1     E Q Q E - - - - - -
pt011936_POPTR_    E Q D N D S T Q R N
 
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