fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G20880.1 HDVTVDLHLGLPNLGD at 178/412 in AT3G20880.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027247 not found in 367aa AT3G57670.1 1st_not 0.478149100 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G20880.1     ------MLFSTVLSHRTLYILTCPNTLIHSYTHPHIHAYLAFTGFLTQLHHLEISCLLLL
gm027247_Glyma1 MADPYSNFFSPLGSNFFHYPSPSPSSQHH---HPYAH------NFLNQ------------
                       :**.: *:   *  ..*.:  *   **: *      .**.*            

AT3G20880.1     FFSLSSLLKLMADPDCIFRNGYVDYYNYSFNYATSLSRIYNSHDSFYYPHQTTNPNINEN
gm027247_Glyma1 -------------------NGS--------------NIINNNHNTFFHFHNFQTTICSSF
                                   **               . * *.*::*:: *:  ..  .. 

AT3G20880.1     PNLTSPDSPPLREALPLLSLSPIHKHQEPTANHHEYYFMETTETSSNSNF---LDQCQDS
gm027247_Glyma1 SSSSSPPSPPLRVALPLLTLSPKNEEEQEEDDDQE---QDQDHEILQDNFCTAMDEEQD-
                .. :** ***** *****:*** ::.::   :.:*    :  .   :.**   :*: ** 

AT3G20880.1     YRHD-----VTVDLHLGLPNLGDGGSSSSDV--VLD---STDHQEGHHDHHQDQGLEVTM
gm027247_Glyma1 -QEDGPDETVTVALHIGLPS-----PSAAEIASVLSSACSTDQEQQQQQQQQD-GNNNNN
                 :.*     *** **:***.     .*::::  **.   ***::: :::::** * : . 

AT3G20880.1     ASDHDDEHGGLQRGNHLHHFWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQ
gm027247_Glyma1 GSDDFSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQ
                .**. .. * *..  :  ::*********:********:* *******************

AT3G20880.1     YRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFA
gm027247_Glyma1 YRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM
                **************.**:******:***:********:*****************::** 

AT3G20880.1     CRRCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCCGID--H
gm027247_Glyma1 CRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHA-AYGIDGFE
                **:*******:**************** **************:****.**. . ***  .

AT3G20880.1     EEEEAASDVEQQE
gm027247_Glyma1 EEEEPASEVEQDR
                ****.**:***:.
BoxShade v3.31 C (beta, 970507) Output
AT3G20880.1     - - - - - - M L F S T V L S H R T L Y I L T C P N T L I H S Y T H P H I H A Y L A F T G F L T Q L H H L E I S C L L L L
gm027247_Glyma1    M A D P Y S N F F S P L G S N F F H Y P S P S P S S Q H H - - - H P Y A H - - - - - - N F L N Q - - - - - - - - - - - -
 
AT3G20880.1     F F S L S S L L K L M A D P D C I F R N G Y V D Y Y N Y S F N Y A T S L S R I Y N S H D S F Y Y P H Q T T N P N I N E N
gm027247_Glyma1    - - - - - - - - - - - - - - - - - - - N G S - - - - - - - - - - - - - - N I I N N N H N T F F H F H N F Q T T I C S S F
 
AT3G20880.1     P N L T S P D S P P L R E A L P L L S L S P I H K H Q E P T A N H H E Y Y F M E T T E T S S N S N F - - - L D Q C Q D S
gm027247_Glyma1    S S S S S P P S P P L R V A L P L L T L S P K N E E E Q E E D D D Q E - - - Q D Q D H E I L Q D N F C T A M D E E Q D -
 
AT3G20880.1     Y R H D - - - - - V T V D L H L G L P N L G D G G S S S S D V - - V L D - - - S T D H Q E G H H D H H Q D Q G L E V T M
gm027247_Glyma1    - Q E D G P D E T V T V A L H I G L P S - - - - - P S A A E I A S V L S S A C S T D Q E Q Q Q Q Q Q Q Q D - G N N N N N
 
AT3G20880.1     A S D H D D E H G G L Q R G N H L H H F W I P T P S Q I L M G P T Q F S C P L C F K T F N R Y N N M Q M H M W G H G S Q
gm027247_Glyma1    G S D D F S S S G F L S N R L N K G Q Y W I P T P S Q I L I G P T Q F S C P V C C K T F N R Y N N M Q M H M W G H G S Q
 
AT3G20880.1     Y R K G P E S L R G T Q P T A M L K L P C Y C C A P G C K N N I D H P R A R P L K D F R T L Q T H Y K R K H G V R P F A
gm027247_Glyma1    Y R K G P E S L R G T Q P T G M L R L P C Y C C S P G C R N N I D H P R A K P L K D F R T L Q T H Y K R K H G I K P F M
 
AT3G20880.1     C R R C G K A F A V K G D W R T H E K N C G K L W Y C S C G S D F K H K R S L K D H V K A F G N G H V P C C G I D - - H
gm027247_Glyma1    C R K C G K A F A V R G D W R T H E K N C G K L W Y C I C G S D F K H K R S L K D H I K A F G S G H A - A Y G I D G F E
 
AT3G20880.1     E E E E A A S D V E Q Q E
gm027247_Glyma1    E E E E P A S E V E Q D R
 
0