fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23030.1 NLKDTELCLGLPGRTE at 14/174 in AT3G23030.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055370 NLKATELRLGLPGTEE in 18/194 AT5G43700.1 1st_not 0.583333333 II
Pt035517 NLKATELRLGLPGTSC in 122/297 AT5G43700.1 1st_not 0.617283950 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G23030.1     ------------------------------------------------------------
pt035517_POPTR_ MADHVHTISYMSCCLKGAAIATDRLSLPLSIIHAFEERITRHFSQPLPFVYKIHLFPFTP
gm055370_Glyma2 ------------------------------------------------------------
                                                                            

AT3G23030.1     -------------------------------------------------MAYEKVNELNL
pt035517_POPTR_ ASPHRKTSYHFSQESLPKEITRATSKSCIHHLLAVPVFEQRLLENMEGGVAYE--NDLNL
gm055370_Glyma2 ------------------------------------------MENTT--VTYQ--TDLNL
                                                                 ::*:  .:***

AT3G23030.1     KDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDE-------------EESTPPTK
pt035517_POPTR_ KATELRLGLPG-TSCTNEEQAVSGAR-NNKRPLPETREERGAKGKSDPRHDDQETAPAPK
gm055370_Glyma2 KATELRLGLPG-TEESEEKTLSAGARINNKRPLTETSDECASNGTSSAPHEKTETAPPAK
                * *** ***** *.  :*:   : .: **** : ** :*              *::*..*

AT3G23030.1     TQIVGWPPVRSSRKNN----------NSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKAL
pt035517_POPTR_ AQIVGWPPIRSYRKNTLQPKKAEAEAAAGMYVKVSMDGAPYLRKIDLKVYKGYPELLKAL
gm055370_Glyma2 TKIVGWPPIRSYRKNSLQ----ESE-GAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKSL
                ::******:** ***.           :  ******************.* .*.:***:*

AT3G23030.1     ENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAP
pt035517_POPTR_ ENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCKKLRIIKGSEAT
gm055370_Glyma2 ENMFKLTIGEHSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCRRLRIMKGSEAR
                *****: ***:.*:****** :.************:******** :**::***:***:* 

AT3G23030.1     ALDSSL
pt035517_POPTR_ G-----
gm055370_Glyma2 GLGCAV
                .
BoxShade v3.31 C (beta, 970507) Output
AT3G23030.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035517_POPTR_    M A D H V H T I S Y M S C C L K G A A I A T D R L S L P L S I I H A F E E R I T R H F S Q P L P F V Y K I H L F P F T P
gm055370_Glyma2    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT3G23030.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A Y E K V N E L N L
pt035517_POPTR_    A S P H R K T S Y H F S Q E S L P K E I T R A T S K S C I H H L L A V P V F E Q R L L E N M E G G V A Y E - - N D L N L
gm055370_Glyma2    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E N T T - - V T Y Q - - T D L N L
 
AT3G23030.1     K D T E L C L G L P G R T E K I K E E Q E V S C V K S N N K R L F E E T R D E - - - - - - - - - - - - - E E S T P P T K
pt035517_POPTR_    K A T E L R L G L P G - T S C T N E E Q A V S G A R - N N K R P L P E T R E E R G A K G K S D P R H D D Q E T A P A P K
gm055370_Glyma2    K A T E L R L G L P G - T E E S E E K T L S A G A R I N N K R P L T E T S D E C A S N G T S S A P H E K T E T A P P A K
 
AT3G23030.1     T Q I V G W P P V R S S R K N N - - - - - - - - - - N S V S Y V K V S M D G A P Y L R K I D L K T Y K N Y P E L L K A L
pt035517_POPTR_    A Q I V G W P P I R S Y R K N T L Q P K K A E A E A A A G M Y V K V S M D G A P Y L R K I D L K V Y K G Y P E L L K A L
gm055370_Glyma2    T K I V G W P P I R S Y R K N S L Q - - - - E S E - G A G I Y V K V S M D G A P Y L R K I D L K V Y G G Y T Q L L K S L
 
AT3G23030.1     E N M F K V M I G E Y C E R E G Y K G S G F V P T Y E D K D G D W M L V G D V P W D M F S S S C K R L R I M K G S D A P
pt035517_POPTR_    E N M F K L T I G E Y S E R E G Y K G S E Y A P T Y E D K D G D W M L I G D V P W D M F L S S C K K L R I I K G S E A T
gm055370_Glyma2    E N M F K L T I G E H S E K E G Y K G S D Y A P T Y E D K D G D W M L V G D V P W D M F V T S C R R L R I M K G S E A R
 
AT3G23030.1     A L D S S L
pt035517_POPTR_    G - - - - -
gm055370_Glyma2    G L G C A V
 
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