fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23030.1 NLKDTELCLGLPGRTE at 14/174 in AT3G23030.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035517 NLKATELRLGLPGTSC in 122/297 AT5G43700.1 1st_not 0.617283950 II

Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G23030.1     ------------------------------------------------------------
pt035517_POPTR_ MADHVHTISYMSCCLKGAAIATDRLSLPLSIIHAFEERITRHFSQPLPFVYKIHLFPFTP
                                                                            

AT3G23030.1     -------------------------------------------------MAYEKVNELNL
pt035517_POPTR_ ASPHRKTSYHFSQESLPKEITRATSKSCIHHLLAVPVFEQRLLENMEGGVAYE--NDLNL
                                                                 :***  *:***

AT3G23030.1     KDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETR-------------DEEESTPPTK
pt035517_POPTR_ KATELRLGLPG-TSCTNEEQAVSGAR-NNKRPLPETREERGAKGKSDPRHDDQETAPAPK
                * *** ***** *.  :*** ** .: **** : ***             *::*::*..*

AT3G23030.1     TQIVGWPPVRSSRKNN----------NSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKAL
pt035517_POPTR_ AQIVGWPPIRSYRKNTLQPKKAEAEAAAGMYVKVSMDGAPYLRKIDLKVYKGYPELLKAL
                :*******:** ***.           :  ******************.**.********

AT3G23030.1     ENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAP
pt035517_POPTR_ ENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCKKLRIIKGSEAT
                *****: ****.******** :.************:******** ****:***:***:*.

AT3G23030.1     ALDSSL
pt035517_POPTR_ G-----
                .     


BoxShade v3.31 C (beta, 970507) Output
AT3G23030.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035517_POPTR_    M A D H V H T I S Y M S C C L K G A A I A T D R L S L P L S I I H A F E E R I T R H F S Q P L P F V Y K I H L F P F T P
 
AT3G23030.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A Y E K V N E L N L
pt035517_POPTR_    A S P H R K T S Y H F S Q E S L P K E I T R A T S K S C I H H L L A V P V F E Q R L L E N M E G G V A Y E - - N D L N L
 
AT3G23030.1     K D T E L C L G L P G R T E K I K E E Q E V S C V K S N N K R L F E E T R - - - - - - - - - - - - - D E E E S T P P T K
pt035517_POPTR_    K A T E L R L G L P G - T S C T N E E Q A V S G A R - N N K R P L P E T R E E R G A K G K S D P R H D D Q E T A P A P K
 
AT3G23030.1     T Q I V G W P P V R S S R K N N - - - - - - - - - - N S V S Y V K V S M D G A P Y L R K I D L K T Y K N Y P E L L K A L
pt035517_POPTR_    A Q I V G W P P I R S Y R K N T L Q P K K A E A E A A A G M Y V K V S M D G A P Y L R K I D L K V Y K G Y P E L L K A L
 
AT3G23030.1     E N M F K V M I G E Y C E R E G Y K G S G F V P T Y E D K D G D W M L V G D V P W D M F S S S C K R L R I M K G S D A P
pt035517_POPTR_    E N M F K L T I G E Y S E R E G Y K G S E Y A P T Y E D K D G D W M L I G D V P W D M F L S S C K K L R I I K G S E A T
 
AT3G23030.1     A L D S S L
pt035517_POPTR_    G - - - - -
 
0