fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23030.1 NLKDTELCLGLPGRTE at 14/174 in AT3G23030.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055370 NLKATELRLGLPGTEE in 18/194 AT5G43700.1 1st_not 0.583333333 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G23030.1     -----MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDE-----
gm055370_Glyma2 MENTTVTYQ--TDLNLKATELRLGLPG-TEESEEKTLSAGARINNKRPLTETSDECASNG
                     ::*:  .:**** *** ***** **: :*:   : .: **** : ** **     

AT3G23030.1     --------EESTPPTKTQIVGWPPVRSSRKNNNSVS-----YVKVSMDGAPYLRKIDLKT
gm055370_Glyma2 TSSAPHEKTETAPPAKTKIVGWPPIRSYRKNSLQESEGAGIYVKVSMDGAPYLRKIDLKV
                         *::**:**:******:** ***. . *     ******************.

AT3G23030.1     YKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCK
gm055370_Glyma2 YGGYTQLLKSLENMFKLTIGEHSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCR
                * .*.:***:******: ***:.*:******.:.********************* :**:

AT3G23030.1     RLRIMKGSDAPALDSSL
gm055370_Glyma2 RLRIMKGSEARGLGCAV
                ********:* .*..::
BoxShade v3.31 C (beta, 970507) Output
AT3G23030.1     - - - - - M A Y E K V N E L N L K D T E L C L G L P G R T E K I K E E Q E V S C V K S N N K R L F E E T R D E - - - - -
gm055370_Glyma2    M E N T T V T Y Q - - T D L N L K A T E L R L G L P G - T E E S E E K T L S A G A R I N N K R P L T E T S D E C A S N G
 
AT3G23030.1     - - - - - - - - E E S T P P T K T Q I V G W P P V R S S R K N N N S V S - - - - - Y V K V S M D G A P Y L R K I D L K T
gm055370_Glyma2    T S S A P H E K T E T A P P A K T K I V G W P P I R S Y R K N S L Q E S E G A G I Y V K V S M D G A P Y L R K I D L K V
 
AT3G23030.1     Y K N Y P E L L K A L E N M F K V M I G E Y C E R E G Y K G S G F V P T Y E D K D G D W M L V G D V P W D M F S S S C K
gm055370_Glyma2    Y G G Y T Q L L K S L E N M F K L T I G E H S E K E G Y K G S D Y A P T Y E D K D G D W M L V G D V P W D M F V T S C R
 
AT3G23030.1     R L R I M K G S D A P A L D S S L
gm055370_Glyma2    R L R I M K G S E A R G L G C A V
 
0