fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23050.1 NLKATELCLGLPGGAE at 11/210 in AT3G23050.2
FSETVDLMLNLQSNKE at 42/210 in AT3G23050.2
NLKATELCLGLPGGAE at 11/243 in AT3G23050.1
FSETVDLMLNLQSNKE at 42/243 in AT3G23050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042254 NYKETELCLGLPGAVG in 19/248 AT4G14550.1 1st_not 0.723112128 II
FAETVDLKLNLQAKEG in 51/248
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G23050.1     ----MIGQL---MNLKATELCLGLPGGAEA---VESPAKSAVGSKRGFSETVDLMLNLQS
pt042254_POPTR_ MTTSVLGTERTDLNYKETELCLGLPGAVGAKNEVETPNKAT--GKRGFAETVDLKLNLQA
                    ::*     :* * *********.. *   **:* *::  .****:***** ****:

AT3G23050.1     NKEGSVDL----KNVSAVPKEK---TTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTS
pt042254_POPTR_ -KEGVMDLNENIKNITSKDKNHLPAVTIKDPAKPPAKAQVVGWPPVRSYRKNVMAQKNAS
                 *** :**    **:::  *::   .*:***:***************.****:*:*:::*

AT3G23050.1     SGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFT
pt042254_POPTR_ EEGEKAST--------GGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFT
                . .*:**:        *.:.*.:***.***************:***:*************

AT3G23050.1     MGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK
pt042254_POPTR_ MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVNSCKRLRIMK
                *******************:******************************:*********

AT3G23050.1     GSEAVGLAPRAMEKYCKNRS
pt042254_POPTR_ GSEAIGLAPRAMEK-CKSRT
                ****:********* **.*:
BoxShade v3.31 C (beta, 970507) Output
AT3G23050.1     - - - - M I G Q L - - - M N L K A T E L C L G L P G G A E A - - - V E S P A K S A V G S K R G F S E T V D L M L N L Q S
pt042254_POPTR_    M T T S V L G T E R T D L N Y K E T E L C L G L P G A V G A K N E V E T P N K A T - - G K R G F A E T V D L K L N L Q A
 
AT3G23050.1     N K E G S V D L - - - - K N V S A V P K E K - - - T T L K D P S K P P A K A Q V V G W P P V R N Y R K N M M T Q Q K T S
pt042254_POPTR_    - K E G V M D L N E N I K N I T S K D K N H L P A V T I K D P A K P P A K A Q V V G W P P V R S Y R K N V M A Q K N A S
 
AT3G23050.1     S G A E E A S S E K A G N F G G G A A G A G L V K V S M D G A P Y L R K V D L K M Y K S Y Q D L S D A L A K M F S S F T
pt042254_POPTR_    E E G E K A S T - - - - - - - - G G S S A A F V K V C M D G A P Y L R K V D L K M Y R S Y Q E L S D A L A K M F S S F T
 
AT3G23050.1     M G N Y G A Q G M I D F M N E S K L M N L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V E S C K R L R I M K
pt042254_POPTR_    M G N Y G A Q G M I D F M N E S K L M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V N S C K R L R I M K
 
AT3G23050.1     G S E A V G L A P R A M E K Y C K N R S
pt042254_POPTR_    G S E A I G L A P R A M E K - C K S R T
 
0