fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23050.1 NLKATELCLGLPGGAE at 11/210 in AT3G23050.2
FSETVDLMLNLQSNKE at 42/210 in AT3G23050.2
NLKATELCLGLPGGAE at 11/243 in AT3G23050.1
FSETVDLMLNLQSNKE at 42/243 in AT3G23050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb020260 NPTSISLSLSLSLSLS in 15/490 AT3G04730.1 not_not 0.498855835 III
LSLSLSLSLSLLLPSP in 31/490
VDVGTELRLGLPGGGA in 155/490
FEDTIDLKLKLPTAGM in 180/490
Sb020598 GFEETELRLGLPGGND in 10/369 AT3G04730.1 not_not 0.489702517 III
FEETIDLKLKLEQPAA in 37/369
Sb033829 AAAATELRLGLPGTEE in 21/348 AT4G29080.1 not_not 0.434782608 III
YKNYKDLSLALEKMFS in 156/348
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G23050.1     -----------------------------MIGQLMNLKATELCLGLPGGAEA-----VES
Sb033829_Sorbi1 -MAPPQEQDYIG---------LSPAAAA----------ATELRLGLPGTEEA-----DGG
Sb020598_Sorbi1 -GGPRVRGD------------RAPARPA----------RRQRRRGCRGGEEAGFRGDHRP
Sb020260_Sorbi1 RGGAQGERDNDGRDRLASNQLLAPAEPKPMAGADVDV-GTELRLGLPGGG----------
                                                        :   *  *            

AT3G23050.1     PAKSAV----------GSKRGFSETVDLMLNL-QSNKEGSVDLKNVSAVPKEKTTLKDPS
Sb033829_Sorbi1 EAAAGTPLTLELLPKGGAKRGFTDAI-----------------VRREAAARGKAPAEDEE
Sb020598_Sorbi1 QAEAGA--------AGGAALG----------------EGGGGWR-----WRRRRPRRGPT
Sb020260_Sorbi1 -AEAAK----------AAKRGFEDTIDLKLKLPTAGMEEAAAAKPEPAAEKAKRPAEAPA
                 * :.           .:  *                             : : . .   

AT3G23050.1     ------KPPA-KAQ---------VVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG
Sb033829_Sorbi1 VDKKKTQAPAAKAQ---------VVGWPPIRSYRKNTMAMNQPTLKTKD-DGEAKQALVQ
Sb020598_Sorbi1 VV-------ASSSQHRRRRYGHEEVAEPEQRGHRRRAAGPR---------KASRPQGTGG
Sb020260_Sorbi1 AD--AEKPPAPKAQ---------AVGWPPVRSYRRNVMTVQSVKSKKEE-EPEKQQSAAA
                         * .:*          *. *  *.:*:.    .         . .       

AT3G23050.1     GAAG--AGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM------GNYGA--
Sb033829_Sorbi1 D-----CLYVKVSMDGAPYLRKVDLKMYKNYKDLSLALEKMFSCFTVGHSESNGKSGR--
Sb020598_Sorbi1 GLAA--RPVVPQEHPGRPIPEKWRRRQGQRRQDVT--------------GVREGEHGRRA
Sb020260_Sorbi1 NASGNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSIALKKMFSTFTT-----SGNN----
                .        *  .  * *  .*   :  :  :*::                  *:     

AT3G23050.1     -----------------QGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWM----------
Sb033829_Sorbi1 -----------------EG----LSDCRLMDHKNGTELVLTYKDKDGDWM----------
Sb020598_Sorbi1 VPAQGGPEDVRELPGAVQGA---PEDVQLLHHR---QLRAAGDDERGDEAAGGPSERLRR
Sb020260_Sorbi1 -----------------------MNEGKLVDPVSGADVVTTYEDKDGDWM----------
                                        .: :*:.     :   : .*: **            

AT3G23050.1     LVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK-----------------------YC
Sb033829_Sorbi1 LVGDVPWRMFTGSCRRLRIMKGSDAVGLAPRVSDK------------------------S
Sb020598_Sorbi1 LLAHVRGQGRRLDARRRRPLGDVRGVVQAPPDHERIGSRRPRTQGDGQVQQQLLSKAYYC
Sb020260_Sorbi1 LVGDVPWEMFVESCKRLRIMKSSEAIGLAPRTKDK------------------------C
                *:..*  .    ..:* * : .  .:  **   ::                        .

AT3G23050.1     KNRS------------------------
Sb033829_Sorbi1 KNG-------------------------
Sb020598_Sorbi1 GNASVSSRYQLTATVDNVLLLLLLHSVS
Sb020260_Sorbi1 KNKS------------------------
                 *
BoxShade v3.31 C (beta, 970507) Output
AT3G23050.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M I G Q L M N L K A T E L C L G L P G G A E A - - - - - V E S
Sb033829_Sorbi1    - M A P P Q E Q D Y I G - - - - - - - - - L S P A A A A - - - - - - - - - - A T E L R L G L P G T E E A - - - - - D G G
Sb020598_Sorbi1    - G G P R V R G D - - - - - - - - - - - - R A P A R P A - - - - - - - - - - R R Q R R R G C R G G E E A G F R G D H R P
Sb020260_Sorbi1    R G G A Q G E R D N D G R D R L A S N Q L L A P A E P K P M A G A D V D V - G T E L R L G L P G G G - - - - - - - - - -
 
AT3G23050.1     P A K S A V - - - - - - - - - - G S K R G F S E T V D L M L N L - Q S N K E G S V D L K N V S A V P K E K T T L K D P S
Sb033829_Sorbi1    E A A A G T P L T L E L L P K G G A K R G F T D A I - - - - - - - - - - - - - - - - - V R R E A A A R G K A P A E D E E
Sb020598_Sorbi1    Q A E A G A - - - - - - - - A G G A A L G - - - - - - - - - - - - - - - - E G G G G W R - - - - - W R R R R P R R G P T
Sb020260_Sorbi1    - A E A A K - - - - - - - - - - A A K R G F E D T I D L K L K L P T A G M E E A A A A K P E P A A E K A K R P A E A P A
 
AT3G23050.1     - - - - - - K P P A - K A Q - - - - - - - - - V V G W P P V R N Y R K N M M T Q Q K T S S G A E E A S S E K A G N F G G
Sb033829_Sorbi1    V D K K K T Q A P A A K A Q - - - - - - - - - V V G W P P I R S Y R K N T M A M N Q P T L K T K D - D G E A K Q A L V Q
Sb020598_Sorbi1    V V - - - - - - - A S S S Q H R R R R Y G H E E V A E P E Q R G H R R R A A G P R - - - - - - - - - K A S R P Q G T G G
Sb020260_Sorbi1    A D - - A E K P P A P K A Q - - - - - - - - - A V G W P P V R S Y R R N V M T V Q S V K S K K E E - E P E K Q Q S A A A
 
AT3G23050.1     G A A G - - A G L V K V S M D G A P Y L R K V D L K M Y K S Y Q D L S D A L A K M F S S F T M - - - - - - G N Y G A - -
Sb033829_Sorbi1    D - - - - - C L Y V K V S M D G A P Y L R K V D L K M Y K N Y K D L S L A L E K M F S C F T V G H S E S N G K S G R - -
Sb020598_Sorbi1    G L A A - - R P V V P Q E H P G R P I P E K W R R R Q G Q R R Q D V T - - - - - - - - - - - - - - G V R E G E H G R R A
Sb020260_Sorbi1    N A S G N S S A F V K V S M D G A P Y L R K V D L K M Y N S Y K D L S I A L K K M F S T F T T - - - - - S G N N - - - -
 
AT3G23050.1     - - - - - - - - - - - - - - - - - Q G M I D F M N E S K L M N L L N S S E Y V P S Y E D K D G D W M - - - - - - - - - -
Sb033829_Sorbi1    - - - - - - - - - - - - - - - - - E G - - - - L S D C R L M D H K N G T E L V L T Y K D K D G D W M - - - - - - - - - -
Sb020598_Sorbi1    V P A Q G G P E D V R E L P G A V Q G A - - - P E D V Q L L H H R - - - Q L R A A G D D E R G D E A A G G P S E R L R R
Sb020260_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - M N E G K L V D P V S G A D V V T T Y E D K D G D W M - - - - - - - - - -
 
AT3G23050.1     L V G D V P W E M F V E S C K R L R I M K G S E A V G L A P R A M E K - - - - - - - - - - - - - - - - - - - - - - - Y C
Sb033829_Sorbi1    L V G D V P W R M F T G S C R R L R I M K G S D A V G L A P R V S D K - - - - - - - - - - - - - - - - - - - - - - - - S
Sb020598_Sorbi1    L L A H V R G Q G R R L D A R R R R P L G D V R G V V Q A P P D H E R I G S R R P R T Q G D G Q V Q Q Q L L S K A Y Y C
Sb020260_Sorbi1    L V G D V P W E M F V E S C K R L R I M K S S E A I G L A P R T K D K - - - - - - - - - - - - - - - - - - - - - - - - C
 
AT3G23050.1     K N R S - - - - - - - - - - - - - - - - - - - - - - - -
Sb033829_Sorbi1    K N G - - - - - - - - - - - - - - - - - - - - - - - - -
Sb020598_Sorbi1    G N A S V S S R Y Q L T A T V D N V L L L L L L H S V S
Sb020260_Sorbi1    K N K S - - - - - - - - - - - - - - - - - - - - - - - -
 
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