fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23050.1 NLKATELCLGLPGGAE at 11/210 in AT3G23050.2
FSETVDLMLNLQSNKE at 42/210 in AT3G23050.2
NLKATELCLGLPGGAE at 11/243 in AT3G23050.1
FSETVDLMLNLQSNKE at 42/243 in AT3G23050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028045 LTNEHGLSLNLKETEL in 10/239 AT3G23050.1 1st_1st 0.768878718 Ia
FSETVDLKLNLQTKED in 47/239
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G23050.1     ---MI----GQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKE
gm028045_Glyma1 MTTMLTNEHGLSLNLKETELCLGLPGGGSEVETPRATG---KRGFSETVDLKLNLQTKED
                   *:    *  :*** **********.. **:*  :.   ********** ****::::

AT3G23050.1     GSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSG--AEEASS
gm028045_Glyma1 LNENLKNVS---KEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSNEEVAEKTTS
                 . :*****   **** ****:***************.******: **.*.   **:::*

AT3G23050.1     EKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQG
gm028045_Glyma1 STIANSG------AFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQG
                .. .* *      .:****************.*****:**********************

AT3G23050.1     MIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLA
gm028045_Glyma1 MIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLA
                ***********:*********:******************** *************:***

AT3G23050.1     PRAMEKYCKNRS
gm028045_Glyma1 PRAMEK-CKSRS
                ****** **.**
BoxShade v3.31 C (beta, 970507) Output
AT3G23050.1     - - - M I - - - - G Q L M N L K A T E L C L G L P G G A E A V E S P A K S A V G S K R G F S E T V D L M L N L Q S N K E
gm028045_Glyma1    M T T M L T N E H G L S L N L K E T E L C L G L P G G G S E V E T P R A T G - - - K R G F S E T V D L K L N L Q T K E D
 
AT3G23050.1     G S V D L K N V S A V P K E K T T L K D P S K P P A K A Q V V G W P P V R N Y R K N M M T Q Q K T S S G - - A E E A S S
gm028045_Glyma1    L N E N L K N V S - - - K E K T L L K D P A K P P A K A Q V V G W P P V R S Y R K N M M A V Q K V S N E E V A E K T T S
 
AT3G23050.1     E K A G N F G G G A A G A G L V K V S M D G A P Y L R K V D L K M Y K S Y Q D L S D A L A K M F S S F T M G N Y G A Q G
gm028045_Glyma1    S T I A N S G - - - - - - A F V K V S M D G A P Y L R K V D L T M Y K S Y K D L S D A L A K M F S S F T M G N Y G A Q G
 
AT3G23050.1     M I D F M N E S K L M N L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V E S C K R L R I M K G S E A V G L A
gm028045_Glyma1    M I D F M N E S K L M D L L N S S E Y V P T Y E D K D G D W M L V G D V P W E M F V G S C K R L R I M K G S E A I G L A
 
AT3G23050.1     P R A M E K Y C K N R S
gm028045_Glyma1    P R A M E K - C K S R S
 
0