fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23130.1 NESEQDLDLELRLGFA at 193/204 in AT3G23130.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm034541 GEILRMDLEIGLPRGYDL in 191/214 AT3G23130.1 1st_1st 0.297029702 Ib
DLELRLGTTYS in 204/214
Pt043316 SDSKDDLDLELRLGSL in 204/215 AT3G23130.1 1st_1st 0.326732673 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G23130.1     -----MERSN----SIELRNSFYGRARTSP---WSYGD---YDNCQQD-HDYLLGFSWPP
gm034541_Glyma1 MAKEFWECSSISNINKSHHHNIHS---NNN-----IAD-----------QDYVNGFPWPP
pt043316_POPTR_ -----MERNSLSS-NVNGHSNIGSRACNNNDKKKKLRDSWNFSSCQSNGHDYLGGLSWPP
                      * ..    . . : .: .   ..        *           :**: *:.***

AT3G23130.1     RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSP-----SSSSTPSPPYPNPNYSY
gm034541_Glyma1 RSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQASSSSLSLLPPPPSSSS
pt043316_POPTR_ RSYTCTFCKREFKSAQALGGHMNVHRRDRARLRLSPP--RDDQCPILTLN-LNPNPSFCT
                *****:**::**:******************** . .      ..  : .   * *. . 

AT3G23130.1     STMANSPPPHHSPLTLFPTLSPPSSPRYRAGLIR-------SLSPKSK-----HTPENAC
gm034541_Glyma1 ATTTTLKPVVTCT---LPLFVSPTPPSPSSELKRWVVVDGIVLNP----LSIMTTPEHYS
pt043316_POPTR_ PFNRTIPSLVS------PPLTAPSTPSLASEVKKWTIGGGNPLDPSSPNLSDLTT--NRS
                .   .  .         * : .*:.*   : : :        *.*         *  : .

AT3G23130.1     KTKKSSLLVEAGEAT-------RFTSKDACKILRNDEIISLELEIGLINESEQDLDLELR
gm034541_Glyma1 KSK----IPESFSAGVGEYHDHAFAREDGCKMLKKGEILRMDLEIGLPRGY--DLDLELR
pt043316_POPTR_ RKS----FFENFD---------GFTRQDGFKIWNKGEIVRLDLDIGLVSDSKDDLDLELR
                :..    : *  .          *: :*. *: .:.**: ::*:***      *******

AT3G23130.1     LGFA--
gm034541_Glyma1 LGTTYS
pt043316_POPTR_ LGSLN-
                **
BoxShade v3.31 C (beta, 970507) Output
AT3G23130.1     - - - - - M E R S N - - - - S I E L R N S F Y G R A R T S P - - - W S Y G D - - - Y D N C Q Q D - H D Y L L G F S W P P
gm034541_Glyma1    M A K E F W E C S S I S N I N K S H H H N I H S - - - N N N - - - - - I A D - - - - - - - - - - - Q D Y V N G F P W P P
pt043316_POPTR_    - - - - - M E R N S L S S - N V N G H S N I G S R A C N N N D K K K K L R D S W N F S S C Q S N G H D Y L G G L S W P P
 
AT3G23130.1     R S Y T C S F C K R E F R S A Q A L G G H M N V H R R D R A R L R L Q Q S P - - - - - S S S S T P S P P Y P N P N Y S Y
gm034541_Glyma1    R S Y T C S F C R K E F K S A Q A L G G H M N V H R R D R A R L R Q S S P P T H E V Q A S S S S L S L L P P P P S S S S
pt043316_POPTR_    R S Y T C T F C K R E F K S A Q A L G G H M N V H R R D R A R L R L S P P - - R D D Q C P I L T L N - L N P N P S F C T
 
AT3G23130.1     S T M A N S P P P H H S P L T L F P T L S P P S S P R Y R A G L I R - - - - - - - S L S P K S K - - - - - H T P E N A C
gm034541_Glyma1    A T T T T L K P V V T C T - - - L P L F V S P T P P S P S S E L K R W V V V D G I V L N P - - - - L S I M T T P E H Y S
pt043316_POPTR_    P F N R T I P S L V S - - - - - - P P L T A P S T P S L A S E V K K W T I G G G N P L D P S S P N L S D L T T - - N R S
 
AT3G23130.1     K T K K S S L L V E A G E A T - - - - - - - R F T S K D A C K I L R N D E I I S L E L E I G L I N E S E Q D L D L E L R
gm034541_Glyma1    K S K - - - - I P E S F S A G V G E Y H D H A F A R E D G C K M L K K G E I L R M D L E I G L P R G Y - - D L D L E L R
pt043316_POPTR_    R K S - - - - F F E N F D - - - - - - - - - G F T R Q D G F K I W N K G E I V R L D L D I G L V S D S K D D L D L E L R
 
AT3G23130.1     L G F A - -
gm034541_Glyma1    L G T T Y S
pt043316_POPTR_    L G S L N -
 
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