fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23130.1 NESEQDLDLELRLGFA at 193/204 in AT3G23130.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm034541 GEILRMDLEIGLPRGYDL in 191/214 AT3G23130.1 1st_1st 0.297029702 Ib
DLELRLGTTYS in 204/214
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Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G23130.1     MERSNSIELRNSFYGRARTSPWSYGDYDNCQQ-----DHDYLLGFSWPPRSYTCSFCKRE
gm034541_Glyma1 --------MAKEFWECSSISNINKSHHHNIHSNNNIADQDYVNGFPWPPRSYTCSFCRKE
                        : :.*:  :  *  . ..:.* :.     *:**: **.***********::*

AT3G23130.1     FRSAQALGGHMNVHRRDRARLRLQQSP------SSSSTPSPPYPNPNYSYSTMANSPPPH
gm034541_Glyma1 FKSAQALGGHMNVHRRDRARLR-QSSPPTHEVQASSSSLSLLPPPPSSSSATTTTLKPVV
                *:******************** *.**      :***: *   * *. * :* :.  *  

AT3G23130.1     HSPLTLF--PTLSPPSSPRYR----AGLIRSLSPKS-KHTPENACKTK-KSSLLVEAGE-
gm034541_Glyma1 TCTLPLFVSPTPPSPSSELKRWVVVDGIV--LNPLSIMTTPEHYSKSKIPESFSAGVGEY
                 ..*.**  ** ..***   *     *::  *.* *   ***: .*:*  .*: . .** 

AT3G23130.1     -ATRFTSKDACKILRNDEIISLELEIGLINESEQDLDLELRLGFA--
gm034541_Glyma1 HDHAFAREDGCKMLKKGEILRMDLEIGL--PRGYDLDLELRLGTTYS
                    *: :*.**:*::.**: ::*****      ********* :
BoxShade v3.31 C (beta, 970507) Output
AT3G23130.1     M E R S N S I E L R N S F Y G R A R T S P W S Y G D Y D N C Q Q - - - - - D H D Y L L G F S W P P R S Y T C S F C K R E
gm034541_Glyma1    - - - - - - - - M A K E F W E C S S I S N I N K S H H H N I H S N N N I A D Q D Y V N G F P W P P R S Y T C S F C R K E
 
AT3G23130.1     F R S A Q A L G G H M N V H R R D R A R L R L Q Q S P - - - - - - S S S S T P S P P Y P N P N Y S Y S T M A N S P P P H
gm034541_Glyma1    F K S A Q A L G G H M N V H R R D R A R L R - Q S S P P T H E V Q A S S S S L S L L P P P P S S S S A T T T T L K P V V
 
AT3G23130.1     H S P L T L F - - P T L S P P S S P R Y R - - - - A G L I R S L S P K S - K H T P E N A C K T K - K S S L L V E A G E -
gm034541_Glyma1    T C T L P L F V S P T P P S P S S E L K R W V V V D G I V - - L N P L S I M T T P E H Y S K S K I P E S F S A G V G E Y
 
AT3G23130.1     - A T R F T S K D A C K I L R N D E I I S L E L E I G L I N E S E Q D L D L E L R L G F A - -
gm034541_Glyma1    H D H A F A R E D G C K M L K K G E I L R M D L E I G L - - P R G Y D L D L E L R L G T T Y S
 
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