fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23220.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042320 not found in 138aa AT3G23230.1 1st_not 0.516129032 II
Pt034947 not found in 138aa AT3G23220.1 not_1st 0.510752688 II
Pt038866 not found in 150aa AT3G23220.1 not_1st 0.494623655 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G23220.1     MERIESYNT-------NEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARA
pt038866_POPTR_ ---MDHPNIGKVNQKGEEIRYRGVRRRPWGKFAAEIRDSTRHGARLWLGTFNTAEEAARA
pt042320_POPTR_ ---MDGDRT-KSKDGGGEVKYRGVRKRPWGKFAAEIRDSTRHGARVWLGTFNTAEEAARA
pt034947_POPTR_ ---MDEDKT-KSKDEGGEVKYRGVRKRPWGKFAAEIRDSARQGARVWLGTFSTAEEAARA
                   ::  .         *::*****:*****:*******:*:***:*****.***:****

AT3G23220.1     YDRAAFGMRGQRAILNFPHEYQMMKDGPNGSHENAVASS--------SSGYRGGGGGD--
pt038866_POPTR_ YDGAAYSMKGPLAILNFPGEY------PKTKVDSDITSSSISSSPLSSSSSSSASSSSMS
pt042320_POPTR_ YDRAAYAMRGHLAILNFSNEY------PNMAGSASVGSS--GSTPYFSSGYSGPSSSSPS
pt034947_POPTR_ YDRAAYAMRGHLAVLNFPNEY------PNMAGNASVGSS--SSTPFSSSGYPGSSSSSSS
                ** **:.*:*  *:***. **      *:   .  : **        **.  . ....  

AT3G23220.1     ---------DGREVIEFEYLDDSLLEELLDYGERSNQDNCNDANR
pt038866_POPTR_ QNAERSGIGRGKEVFEIEYLDDKLLEDLLDFEEENNPNG------
pt042320_POPTR_ ML---------REVFEFECLDDKLLEEMLEQEEKKSKKN------
pt034947_POPTR_ TQ---------QEVFEFECLDDKLLEELLEQEEKRSKKT------
                           :**:*:* ***.***::*:  *. . .
BoxShade v3.31 C (beta, 970507) Output
AT3G23220.1     M E R I E S Y N T - - - - - - - N E M K Y R G V R K R P W G K Y A A E I R D S A R H G A R V W L G T F N T A E D A A R A
pt038866_POPTR_    - - - M D H P N I G K V N Q K G E E I R Y R G V R R R P W G K F A A E I R D S T R H G A R L W L G T F N T A E E A A R A
pt042320_POPTR_    - - - M D G D R T - K S K D G G G E V K Y R G V R K R P W G K F A A E I R D S T R H G A R V W L G T F N T A E E A A R A
pt034947_POPTR_    - - - M D E D K T - K S K D E G G E V K Y R G V R K R P W G K F A A E I R D S A R Q G A R V W L G T F S T A E E A A R A
 
AT3G23220.1     Y D R A A F G M R G Q R A I L N F P H E Y Q M M K D G P N G S H E N A V A S S - - - - - - - - S S G Y R G G G G G D - -
pt038866_POPTR_    Y D G A A Y S M K G P L A I L N F P G E Y - - - - - - P K T K V D S D I T S S S I S S S P L S S S S S S S A S S S S M S
pt042320_POPTR_    Y D R A A Y A M R G H L A I L N F S N E Y - - - - - - P N M A G S A S V G S S - - G S T P Y F S S G Y S G P S S S S P S
pt034947_POPTR_    Y D R A A Y A M R G H L A V L N F P N E Y - - - - - - P N M A G N A S V G S S - - S S T P F S S S G Y P G S S S S S S S
 
AT3G23220.1     - - - - - - - - - D G R E V I E F E Y L D D S L L E E L L D Y G E R S N Q D N C N D A N R
pt038866_POPTR_    Q N A E R S G I G R G K E V F E I E Y L D D K L L E D L L D F E E E N N P N G - - - - - -
pt042320_POPTR_    M L - - - - - - - - - R E V F E F E C L D D K L L E E M L E Q E E K K S K K N - - - - - -
pt034947_POPTR_    T Q - - - - - - - - - Q E V F E F E C L D D K L L E E L L E Q E E K R S K K T - - - - - -
 
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